Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WHSC1	Gene	0	16.03	28.01	14.18	29.36	114.69	22.45	21.45
2	353275	Transcript	0	3.14	16.95	2.91	16.81	31.55	11.92	5.41
3	350915	Transcript	0	2.68	1.47	1.73	0.64	9.43	0.89	1.44
4	382889	Transcript	0	0	0	0	0	0	0	0
5	312087	Transcript	0	0	0	0	0	0	0	0
6	382891	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	382892	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	382895	Transcript	0	0	0	0	0	0	0	0
9	398261	Transcript	0	4.05	4.31	2.70	3.77	20.67	3.41	4.02
10	382888	Transcript	0	5.45	17.07	6.32	15.97	9.05	13.69	3.07
11	ER1a	ExonRegion	0	2.52	7.79	1.23	7.31	18.63	5.46	3.12
12	E1a_E5a	KnownJunction	0	3.76	26.11	4.58	26.31	44.47	18.38	7.71
13	ER2a	ExonRegion	0	7.26	4.40	4.69	1.92	25.65	2.67	3.98
14	E2_Ab	KnownBoundary	1	302.59	157.50	197.15	128.17	183.22	138.74	119.31
15	ER2b	ExonRegion	1	11.63	8.60	6.22	4.54	27.05	3.39	4.43
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E2a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3_Aa	NovelBoundary	1	60.30	32.02	37.61	23.16	9.24	18.22	22.99
21	ER3a	ExonRegion	0	1.30	3.59	1.24	3.16	14.72	3.10	5.96
22	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4a	ExonRegion	0	0.58	1.58	0.58	1.18	5.22	1.60	1.10
24	E4a_E5a	KnownJunction	0	0.00	1.29	0.00	1.06	1.94	0.00	1.68
25	ER5a	ExonRegion	0	4.61	32.19	4.74	26.19	42.92	19.00	10.46
26	ER5b	ExonRegion	0	48.07	91.33	40.47	92.19	286.35	66.00	54.87
27	E5a_E6a	KnownJunction	0	74.75	92.55	72.50	88.53	417.39	51.51	78.29
28	ER6a	ExonRegion	0	44.87	83.94	48.95	77.72	286.69	51.67	59.89
29	E6a_E7a	KnownJunction	0	38.77	85.20	39.25	83.74	199.50	52.45	60.29
30	ER7a	ExonRegion	0	47.85	83.40	50.09	97.60	298.01	52.42	64.22
31	E7a_E8a	KnownJunction	0	63.09	92.19	56.86	120.75	274.95	56.79	64.39
32	ER8a	ExonRegion	0	39.04	82.22	35.90	87.28	274.35	51.70	62.37
33	E8a_E9a	KnownJunction	0	31.18	108.40	40.87	92.06	238.46	55.64	68.17
34	ER9a	ExonRegion	0	34.88	90.61	34.09	86.04	260.38	55.09	87.24
35	E9_Da	NovelBoundary	1	17.91	2.57	18.61	1.54	3.39	0.00	0.77
36	E9a_E10a	KnownJunction	0	39.04	65.55	51.59	78.13	284.63	46.34	77.07
37	ER10a	ExonRegion	0	43.23	71.99	43.61	74.03	346.20	45.27	79.21
38	E10_Da	NovelBoundary	0	2.74	12.24	0.68	4.47	13.09	2.87	3.68
39	E10a_E11a	KnownJunction	1	23.20	50.73	30.15	52.94	267.44	30.39	71.54
40	E10a_E12a	NovelJunction	0	3.77	5.83	3.20	10.67	25.73	14.71	4.53
41	E10a_E14a	NovelJunction	0	3.67	8.96	0.69	4.42	33.31	1.02	3.24
42	ER11a	ExonRegion	0	38.56	52.73	31.18	56.33	235.87	29.04	62.26
43	E11a_E12a	KnownJunction	0	31.26	56.64	34.76	67.16	212.20	33.29	69.88
44	ER12a	ExonRegion	0	35.45	59.80	35.19	81.30	259.28	41.07	64.62
45	E12a_E13a	KnownJunction	0	3.89	7.07	1.55	8.13	55.86	6.81	8.63
46	E12a_E14a	KnownJunction	0	30.69	48.68	23.27	70.00	206.90	44.65	43.60
47	I12	Intron	0	4.82	6.63	3.20	4.77	25.82	3.42	5.30
48	I12_AR1	ActiveIntronRegion	0	4.82	6.64	3.20	4.78	25.83	3.42	5.31
49	ER13a	ExonRegion	0	7.94	10.61	6.47	10.41	68.61	9.61	16.17
50	E13_Da	KnownBoundary	0	11.07	14.00	9.90	7.83	63.40	7.80	18.30
51	ER13b	ExonRegion	0	4.05	4.31	2.70	3.77	20.67	3.41	4.02
52	ER14a	ExonRegion	0	17.82	49.50	23.55	54.49	186.06	32.16	36.37
53	E14a_E15a	KnownJunction	0	14.39	38.75	11.80	45.95	169.92	25.97	28.71
54	ER15a	ExonRegion	0	14.48	42.65	15.06	40.36	147.88	24.06	29.40
55	E15_Da	NovelBoundary	0	1.57	1.42	2.10	10.00	1.18	1.10	1.71
56	E15a_E16a	KnownJunction	0	2.85	16.58	2.99	12.08	1.11	14.36	0.00
57	E15a_E16b	KnownJunction	0	18.16	31.81	12.70	25.47	153.97	17.71	26.24
58	I15_SR1	SilentIntronRegion	1	3.90	4.19	1.34	8.13	11.35	0.91	4.59
59	ER16a	ExonRegion	0	8.04	17.57	9.65	19.86	17.00	13.01	6.15
60	E16_Ab	KnownBoundary	0	12.87	11.87	12.06	23.87	19.32	11.90	7.27
61	ER16b	ExonRegion	0	27.14	52.12	29.27	53.40	217.16	36.42	46.41
62	E16a_E17a	KnownJunction	0	22.98	43.95	22.99	41.77	220.29	29.83	44.90
63	ER17a	ExonRegion	0	22.61	59.02	19.91	49.94	202.63	33.69	52.88
64	E17a_E18a	KnownJunction	0	19.14	72.90	20.48	42.91	195.10	36.82	47.11
65	ER18a	ExonRegion	0	19.53	59.88	18.41	49.78	204.72	34.47	39.34
66	E18a_E19a	KnownJunction	0	19.03	54.80	23.90	55.62	165.93	45.45	31.00
67	ER19a	ExonRegion	0	25.41	57.08	27.03	60.11	184.46	51.52	34.14
68	E19a_E20a	KnownJunction	0	26.42	70.78	21.97	45.51	178.48	49.42	31.62
69	ER20a	ExonRegion	0	24.95	67.76	23.60	54.06	180.32	44.50	46.11
70	E20a_E21a	KnownJunction	0	19.26	53.15	15.35	49.55	141.64	36.42	23.29
71	ER21a	ExonRegion	0	21.43	51.95	20.84	52.23	185.47	44.47	39.27
72	E21a_E22a	KnownJunction	0	27.94	55.04	25.51	59.98	287.70	52.69	44.97
73	ER22a	ExonRegion	0	32.38	70.85	31.10	91.13	363.15	68.80	61.24
74	E22a_E23a	KnownJunction	0	41.11	71.22	34.60	83.82	294.80	70.62	56.42
75	E23_Aa	NovelBoundary	0	6.66	6.07	4.58	2.41	67.82	1.29	5.10
76	ER23a	ExonRegion	0	43.30	62.23	31.12	82.12	326.62	64.53	58.54
77	E23a_E24a	KnownJunction	0	46.16	62.66	35.28	71.93	474.57	68.61	56.19
78	ER24a	ExonRegion	0	39.05	57.17	29.19	75.03	364.23	54.29	47.07
79	E24a_E25a	KnownJunction	0	44.31	55.09	27.40	89.83	320.99	57.08	43.71
80	ER25a	ExonRegion	0	28.90	59.75	22.70	71.78	233.49	56.89	42.86
81	E25a_E26a	KnownJunction	0	24.82	51.73	13.51	57.87	151.69	42.18	30.53
82	ER26a	ExonRegion	0	13.74	36.02	12.01	41.53	125.92	34.73	23.25
83	E26_Da	KnownBoundary	0	7.46	33.92	11.35	25.98	120.91	31.70	9.69
84	ER26b	ExonRegion	0	23.73	35.71	21.04	38.98	188.15	35.66	27.42
85	ER26c	ExonRegion	0	0.77	0.00	0.51	0.00	2.63	0.00	0.34