Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FGFR3	Gene	0	1.86	3.50	0.86	4.96	34.61	3.18	9.51
2	360915	Transcript	0	0.25	0.68	0.06	0.46	4.12	0.64	1.73
3	260795	Transcript	0	0	0	0	0	0	0	0
4	352904	Transcript	0	0.00	0.00	0.00	0.00	0.92	0.00	3.05
5	340107	Transcript	0	0.97	2.68	0.11	3.36	2.93	1.03	8.80
6	312875	Transcript	0	0.28	0.95	0.25	2.51	4.32	2.87	3.09
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.35	0.00	0.00	0.00
10	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	1.30	0.00	0.00	0.00
11	ER2b	ExonRegion	0	0.60	1.99	0.00	3.65	3.23	0.61	0.13
12	E2a_E3a	KnownJunction	0	0.72	4.36	0.00	0.00	7.10	0.00	1.53
13	ER3a	ExonRegion	0	0.40	3.08	0.37	3.81	14.66	1.51	4.74
14	E3a_E4a	KnownJunction	0	0.00	6.25	0.00	3.36	25.47	1.66	5.99
15	ER4a	ExonRegion	0	0.99	3.53	0.00	3.40	37.13	2.58	11.49
16	E4a_E5a	KnownJunction	0	0.65	3.15	0.00	3.17	34.58	3.06	11.14
17	ER5a	ExonRegion	0	0.75	6.95	0.15	5.11	27.89	1.49	8.53
18	E5a_E6a	KnownJunction	0	1.59	4.10	0.89	5.82	44.17	0.00	18.24
19	ER6a	ExonRegion	0	0.47	7.45	0.49	6.90	50.22	0.85	13.73
20	E6a_E7a	KnownJunction	0	0.83	6.52	0.89	2.79	47.72	2.76	7.91
21	ER7a	ExonRegion	0	0.41	4.85	0.69	6.35	45.53	3.44	12.19
22	E7a_E8a	KnownJunction	0	1.49	4.07	0.00	4.17	3.30	1.45	10.19
23	E7a_E9a	KnownJunction	0	0.00	0.00	0.56	0.00	44.98	1.18	0.00
24	E7a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.92	0.00	3.05
25	ER8a	ExonRegion	0	1.41	2.35	0.32	4.39	5.51	1.66	10.82
26	E8a_E10a	KnownJunction	0	0.00	1.63	0.00	1.52	0.00	0.00	5.37
27	ER9a	ExonRegion	0	1.89	3.66	0.79	6.68	61.68	5.20	2.13
28	E9_Da	NovelBoundary	0	1.84	4.54	0.80	9.70	11.25	1.58	2.14
29	E9a_E10a	KnownJunction	0	0.82	3.63	0.62	4.90	22.85	4.48	0.00
30	I9_SR1	SilentIntronRegion	0	1.17	0.88	0.55	2.67	8.82	1.38	1.05
31	ER10a	ExonRegion	0	1.77	3.92	1.42	7.38	39.57	4.24	9.12
32	E10a_E11a	KnownJunction	0	0.00	1.63	0.00	0.00	6.92	1.10	3.25
33	E10a_E11b	KnownJunction	0	1.03	0.00	1.67	4.14	37.48	1.15	7.25
34	ER11a	ExonRegion	0	0.58	2.43	0.34	0.94	16.60	1.53	6.24
35	ER11b	ExonRegion	0	3.29	3.69	0.64	3.80	49.80	1.83	17.17
36	E11a_E12a	KnownJunction	0	6.59	1.42	0.00	3.01	29.37	1.61	14.09
37	ER12a	ExonRegion	0	1.86	4.79	0.00	2.30	44.43	1.96	13.19
38	E12a_E13a	KnownJunction	0	5.14	3.78	0.00	5.45	65.54	3.97	18.79
39	ER13a	ExonRegion	0	6.65	6.07	0.00	8.96	53.53	4.74	15.90
40	E13a_E14a	KnownJunction	0	1.00	4.18	0.00	6.94	28.22	2.49	14.93
41	ER14a	ExonRegion	0	1.79	6.04	0.01	4.73	47.03	3.47	14.22
42	E14a_E15a	KnownJunction	0	2.27	4.39	0.50	3.77	47.44	3.03	19.72
43	ER15a	ExonRegion	0	1.61	5.12	1.93	11.56	66.64	4.73	23.53
44	E15a_E16a	KnownJunction	0	4.12	1.52	0.00	9.10	31.61	4.37	18.26
45	E15a_E17a	KnownJunction	0	0.93	0.00	0.00	1.46	1.18	1.21	0.89
46	ER16a	ExonRegion	0	2.49	3.37	0.25	10.96	47.53	3.75	19.60
47	E16a_E17a	KnownJunction	0	1.69	4.39	0.00	10.19	57.75	4.64	16.98
48	ER17a	ExonRegion	0	2.58	7.05	0.51	10.32	70.39	4.45	21.50
49	E17a_E18a	KnownJunction	0	0.78	4.76	1.47	11.84	53.85	5.79	23.55
50	ER18a	ExonRegion	0	1.99	3.66	0.31	7.85	46.70	1.61	14.22
51	E18a_E19a	KnownJunction	0	1.42	2.89	0.00	2.68	43.73	1.66	14.62
52	ER19a	ExonRegion	0	0.21	2.18	0.41	8.11	51.06	2.66	11.34
53	E19_Da	KnownBoundary	0	0.00	2.92	0.60	6.85	43.75	2.84	8.94
54	E19a_E19b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER19b	ExonRegion	0	0.00	1.64	0.17	7.92	32.02	5.33	5.93
56	E19_Ab	KnownBoundary	0	0.00	1.18	0.00	6.01	41.93	4.72	5.53
57	ER19c	ExonRegion	0	1.23	4.92	0.00	5.37	33.55	6.27	4.56
58	E19_Db	KnownBoundary	0	0.00	2.55	0.00	13.36	0.00	12.22	0.00
59	E19b_E19c	KnownJunction	0	0.83	1.42	0.00	6.04	12.96	5.76	0.00
60	E19_Ac	KnownBoundary	0	0.00	1.26	0.00	5.58	17.13	2.55	0.00
61	ER19d	ExonRegion	0	1.02	3.44	0.00	7.48	20.25	9.19	3.04
62	ER19e	ExonRegion	0	3.50	2.91	1.11	6.95	43.54	3.22	11.29
63	E19_Dc	KnownBoundary	0	0.73	1.60	0.80	1.68	23.58	3.06	13.64
64	E19c_E19d	KnownJunction	0	0.00	1.42	0.75	1.49	0.00	2.84	9.27
65	ER19f	ExonRegion	0	2.61	1.21	0.68	2.49	36.12	2.45	15.92
66	E19_Ae	KnownBoundary	0	1.97	0.00	0.00	3.14	43.73	0.00	7.57
67	ER19g	ExonRegion	0	1.94	1.21	0.94	4.28	40.07	2.24	14.40
68	ER19h	ExonRegion	0	1.54	1.21	0.68	6.23	43.73	0.00	12.82
69	ER19i	ExonRegion	0	1.95	1.80	0.68	5.27	37.23	3.29	8.62
70	E19_De	KnownBoundary	0	1.03	2.65	0.79	3.25	23.10	4.74	3.24
71	ER19j	ExonRegion	0	0.77	2.43	0.68	3.74	23.65	4.90	5.67
72	ER19k	ExonRegion	0	2.39	2.43	0.78	2.78	25.54	4.90	5.32
73	ER19l	ExonRegion	0	2.69	2.23	1.96	2.87	28.18	4.17	7.31
74	IG32	Intergenic	0	17.29	15.17	19.74	21.86	24.38	15.78	36.46
75	IG32_AR1	ActiveIntergenicRegion	0	31.32	25.03	26.98	41.60	32.98	33.58	53.90
76	IG32_SR2	SilentIntergenicRegion	0	98.28	63.89	107.97	67.21	118.00	70.86	137.60
77	IG32_AR2	ActiveIntergenicRegion	0	73.66	67.28	88.30	89.34	117.34	61.86	164.50