Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MUC4	Gene	0	4.45	2.88	0.19	0.22	5.53	0.22	0.06
2	339251	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	349607	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	392407	Transcript	0	0.00	0.00	0.00	0.00	1.15	0.00	0.00
5	346145	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	392409	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	405167	Transcript	0	5.18	3.82	0.30	0.16	7.25	0.18	0.04
8	333177	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	308466	Transcript	0	0	0	0	0	0	0	0
10	381925	Transcript	0	31.67	16.88	1.28	1.27	52.46	1.88	1.08
11	381924	Transcript	0	8.31	4.24	0.40	0.00	12.55	0.00	0.00
12	381926	Transcript	0	25.11	15.89	1.05	0.00	30.35	1.96	0.53
13	381931	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.12	0.00	0.00
15	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.99	0.00	0.00
16	ER1b	ExonRegion	0	0.92	0.00	0.00	0.00	0.61	0.00	0.00
17	E1a_E2b	KnownJunction	0	1.95	0.00	0.00	0.00	0.90	0.00	0.00
18	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER2a	ExonRegion	0	0.46	0.00	0.00	0.00	0.32	0.00	0.00
21	ER2b	ExonRegion	0	3.68	2.55	0.21	0.20	3.20	0.11	0.00
22	E2_Da	KnownBoundary	0	2.64	2.52	0.00	0.00	2.14	1.63	0.00
23	E2a_E2k	KnownJunction	0	17.56	8.49	0.68	0.00	67.57	0.00	0.00
24	E2a_E2o	NovelJunction	0	11.52	6.07	0.00	0.00	47.33	0.00	0.00
25	E2_Db	KnownBoundary	0	0.78	3.55	0.00	0.00	5.49	0.00	0.00
26	E2b_E2m	NovelJunction	0	7.84	2.57	0.00	0.00	12.06	0.00	0.00
27	E2b_E2q	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER2c	ExonRegion	0	2.22	2.69	0.00	0.00	5.47	1.23	0.00
29	ER2d	ExonRegion	0	5.31	4.56	0.22	0.04	9.12	0.10	0.05
30	E2_Ac	KnownBoundary	0	22.01	8.17	0.00	0.00	20.31	0.00	0.00
31	ER2e	ExonRegion	0	5.90	2.52	0.00	0.00	3.10	0.00	0.00
32	E2_Dc	KnownBoundary	0	15.32	16.00	0.00	1.63	13.95	0.00	0.00
33	E2c_E2d	KnownJunction	0	63.34	33.76	2.56	2.55	104.91	3.75	2.16
34	E2c_E2f	NovelJunction	0	11.93	10.35	0.70	0.00	14.75	0.00	0.67
35	ER2f	ExonRegion	0	9.09	4.35	0.00	0.00	7.34	0.58	0.00
36	E2_Ad	KnownBoundary	0	90.74	74.74	5.71	1.68	109.57	2.87	0.89
37	ER2g	ExonRegion	0	12.23	7.43	0.00	0.00	11.72	0.39	0.32
38	E2_Dd	KnownBoundary	0	39.34	23.72	4.12	1.27	76.05	0.00	1.65
39	E2d_E2h	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER2h	ExonRegion	0	8.34	8.91	0.00	0.19	6.10	0.38	0.08
41	E2_Ae	KnownBoundary	0	3.00	4.47	0.00	0.00	3.53	0.00	0.00
42	ER2i	ExonRegion	0	3.73	3.40	0.00	0.00	5.76	0.00	0.00
43	E2_De	KnownBoundary	0	21.85	15.08	0.00	0.00	46.47	0.00	0.00
44	E2e_E2f	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER2j	ExonRegion	0	10.90	8.55	0.53	0.49	17.66	0.00	0.00
46	E2_Af	KnownBoundary	0	13.60	17.44	0.70	0.00	30.38	0.00	0.00
47	ER2k	ExonRegion	0	7.99	10.65	0.00	1.25	26.98	0.00	0.43
48	E2_Df	KnownBoundary	0	4.14	4.89	0.00	0.00	4.59	0.00	0.86
49	E2f_E2g	KnownJunction	0	16.62	8.49	0.80	0.00	25.10	0.00	0.00
50	E2f_E2h	NovelJunction	0	32.43	16.16	2.20	1.54	27.85	0.00	1.39
51	ER2l	ExonRegion	0	9.75	5.92	0.75	1.06	19.04	0.00	0.20
52	E2_Ag	KnownBoundary	0	53.22	37.02	2.37	0.00	55.65	0.00	1.52
53	ER2m	ExonRegion	0	11.29	3.06	1.13	1.25	17.53	0.00	0.00
54	E2_Ah	KnownBoundary	0	36.93	23.49	0.00	1.52	69.16	0.00	0.00
55	ER2n	ExonRegion	0	1.12	2.85	0.00	0.19	4.72	0.00	0.02
56	E2_Dg	KnownBoundary	0	43.34	47.34	0.00	0.00	60.33	0.00	0.00
57	ER2o	ExonRegion	0	6.87	3.49	0.51	0.00	6.92	0.26	0.20
58	E2_Ai	KnownBoundary	0	21.63	19.70	0.00	0.00	23.88	0.00	0.79
59	ER2p	ExonRegion	0	11.19	11.15	0.25	1.23	20.35	0.06	0.55
60	E2_Dh	KnownBoundary	0	98.17	87.27	6.28	1.60	217.39	4.77	1.68
61	E2h_E2j	KnownJunction	0	3.92	3.18	0.00	0.00	3.37	1.50	0.00
62	ER2q	ExonRegion	0	2.09	1.97	0.11	0.34	3.81	0.00	0.00
63	E2_Aj	KnownBoundary	0	23.08	9.20	0.00	0.00	51.98	0.00	0.00
64	ER2r	ExonRegion	0	5.64	1.44	0.00	0.00	4.84	0.00	0.21
65	E2i_E2q	KnownJunction	0	2.64	0.00	0.00	0.00	14.57	0.00	0.00
66	ER2s	ExonRegion	0	1.42	2.83	0.00	0.00	4.11	2.36	0.00
67	ER2t	ExonRegion	0	5.94	8.83	0.00	0.00	2.78	2.45	0.00
68	E2_Dj	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	E2j_E2l	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	ER2u	ExonRegion	0	1.75	2.67	0.00	0.00	3.33	0.42	0.00
71	E2_Al	KnownBoundary	0	14.10	12.32	0.00	0.00	62.70	0.00	0.00
72	ER2v	ExonRegion	0	6.00	4.42	0.43	0.00	17.33	1.23	0.00
73	E2_Dk	KnownBoundary	0	0.00	2.50	0.00	0.00	1.84	1.37	0.00
74	E2k_E2m	KnownJunction	0	71.40	44.48	3.15	0.00	87.69	4.37	1.58
75	ER2w	ExonRegion	0	3.12	3.25	1.63	0.00	4.50	0.50	0.00
76	E2_Am	KnownBoundary	0	36.52	23.30	4.99	1.38	61.76	1.34	0.00
77	ER2x	ExonRegion	0	5.54	4.48	0.92	0.00	5.42	0.80	0.00
78	E2_Dl	KnownBoundary	0	21.18	7.20	0.00	0.00	33.20	1.66	0.85
79	ER2y	ExonRegion	0	3.93	3.37	0.10	0.00	3.95	0.10	0.00
80	E2_An	KnownBoundary	0	0.72	0.00	0.00	0.00	2.17	0.00	0.00
81	ER2z	ExonRegion	0	1.40	3.23	0.04	0.00	10.16	0.00	0.00
82	E2_Dm	KnownBoundary	0	3.72	1.44	0.00	0.00	31.91	0.00	0.00
83	E2m_E2o	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER2aa	ExonRegion	0	4.93	1.26	0.00	0.00	7.16	0.00	0.03
85	E2_Ao	KnownBoundary	0	27.76	17.52	0.79	0.00	102.15	0.00	1.55
86	ER2ab	ExonRegion	0	2.37	2.31	0.00	0.00	5.43	0.00	0.15
87	E2_Dn	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	E2n_E2p	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	ER2ac	ExonRegion	0	0.11	0.17	0.00	0.00	2.70	0.00	0.00
90	E2_Ap	KnownBoundary	0	12.08	3.18	0.86	0.00	21.95	3.32	0.00
91	ER2ad	ExonRegion	0	0.28	0.00	0.00	0.00	3.71	0.00	0.00
92	E2_Do	KnownBoundary	0	13.89	5.25	0.89	0.00	20.47	0.00	0.00
93	ER2ae	ExonRegion	0	1.14	1.23	0.00	0.00	2.64	0.00	0.00
94	E2_Aq	KnownBoundary	0	6.29	3.73	0.00	0.00	6.27	0.00	0.00
95	ER2af	ExonRegion	0	4.81	2.58	0.00	0.00	4.30	0.00	0.00
96	E2p_E3a	KnownJunction	0	5.76	0.00	0.00	0.00	4.31	0.00	0.00
97	ER3a	ExonRegion	0	4.85	1.81	0.00	0.00	7.79	0.00	0.00
98	E3a_E4a	KnownJunction	0	4.52	0.00	0.00	0.00	1.84	0.00	0.00
99	ER4a	ExonRegion	0	1.66	0.61	0.00	0.00	1.80	0.00	0.00
100	E4a_E5a	KnownJunction	0	0.00	1.05	0.00	0.00	2.07	0.00	0.00
101	E4a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
102	ER5a	ExonRegion	0	2.32	0.73	0.00	0.00	2.53	0.00	0.00
103	E5_Ab	KnownBoundary	0	1.75	1.63	0.00	0.00	1.11	0.00	0.00
104	ER5b	ExonRegion	0	1.37	1.95	0.00	0.00	0.98	0.00	0.00
105	E5a_E6a	KnownJunction	0	1.03	1.50	0.00	0.00	1.18	0.00	0.00
106	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
107	ER6a	ExonRegion	0	3.44	1.11	0.00	0.00	1.65	0.00	0.00
108	E6a_E7a	KnownJunction	0	1.02	1.29	0.00	0.00	1.08	0.00	0.00
109	ER7a	ExonRegion	0	3.64	1.24	0.00	0.00	1.98	0.00	0.00
110	E7a_E8a	KnownJunction	0	3.20	0.00	0.00	0.00	2.35	0.00	0.00
111	ER8a	ExonRegion	0	2.60	0.00	0.00	0.00	2.74	0.00	0.00
112	E8a_E9a	KnownJunction	0	2.55	0.00	0.00	0.00	2.35	0.00	0.00
113	ER9a	ExonRegion	0	2.48	1.99	0.00	0.00	3.73	0.00	0.00
114	E9_Da	KnownBoundary	0	1.80	1.55	0.00	0.00	3.34	0.00	0.00
115	E9a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
116	ER9b	ExonRegion	0	1.44	2.02	0.00	0.00	3.33	0.00	0.00
117	E9b_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
118	E9c_E10a	KnownJunction	0	1.57	1.18	0.00	0.00	6.20	0.00	0.00
119	ER9c	ExonRegion	0	1.31	1.21	0.00	0.00	5.26	0.00	0.00
120	ER10a	ExonRegion	0	2.23	0.56	0.00	0.00	5.03	0.00	0.00
121	E10a_E11a	KnownJunction	0	1.02	1.63	0.00	0.00	4.33	0.00	0.00
122	ER11a	ExonRegion	0	1.50	0.91	0.00	0.00	2.11	0.00	0.00
123	E11a_E12a	KnownJunction	0	1.60	1.29	0.00	0.00	5.67	0.00	0.00
124	ER12a	ExonRegion	0	2.38	0.18	0.18	0.78	5.36	0.00	0.00
125	E12_Ab	KnownBoundary	0	4.32	0.00	0.89	0.00	2.05	0.00	0.00
126	ER12b	ExonRegion	0	2.21	0.00	0.34	0.00	1.74	0.00	0.00
127	E12a_E13a	KnownJunction	0	0.63	0.00	0.00	0.00	1.08	0.00	0.00
128	ER13a	ExonRegion	0	3.34	0.93	0.06	0.00	3.34	0.00	0.00
129	E13a_E14a	KnownJunction	0	2.59	0.97	0.56	0.00	4.43	0.00	0.00
130	ER14a	ExonRegion	0	2.37	0.96	0.37	0.00	3.25	0.00	0.00
131	E14_Ab	KnownBoundary	0	6.26	1.18	0.00	0.00	1.87	0.00	0.00
132	ER14b	ExonRegion	0	6.88	2.51	0.00	0.00	1.82	0.00	0.00
133	E14a_E15a	KnownJunction	0	6.43	3.94	0.00	0.00	1.18	0.00	0.00
134	ER15a	ExonRegion	0	7.50	2.60	0.00	0.00	4.84	0.00	0.00
135	E15a_E16a	KnownJunction	0	14.82	1.50	0.00	0.00	10.44	0.00	0.00
136	ER16a	ExonRegion	0	21.04	0.65	0.00	0.41	10.21	0.00	0.00
137	E16a_E17a	KnownJunction	0	16.12	0.00	0.00	0.00	13.16	0.00	0.00
138	ER17a	ExonRegion	0	7.49	0.67	0.37	0.00	7.00	0.68	0.00
139	E17a_E18a	KnownJunction	0	5.72	0.00	0.00	0.00	2.10	0.00	0.00
140	ER18a	ExonRegion	0	4.40	0.97	0.28	0.00	6.43	0.00	0.00
141	E18a_E19a	KnownJunction	0	1.87	0.00	0.00	0.00	3.99	0.00	0.00
142	E18a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	1.15	0.00	0.00
143	ER19a	ExonRegion	0	2.15	2.02	0.32	1.18	3.02	0.00	0.00
144	E19a_E20a	KnownJunction	0	6.58	1.52	0.00	0.00	1.94	0.00	0.00
145	ER20a	ExonRegion	0	4.99	1.34	0.57	0.72	6.66	1.04	0.00
146	E20a_E21a	KnownJunction	0	6.61	0.00	0.00	1.60	4.52	0.00	0.00
147	ER21a	ExonRegion	0	5.80	3.58	0.00	0.81	2.87	0.00	0.00
148	E21a_E22a	KnownJunction	0	5.77	0.00	0.00	0.00	1.13	0.00	0.00
149	ER22a	ExonRegion	0	2.87	0.04	0.00	0.00	1.77	0.00	0.00
150	E22a_E23a	KnownJunction	0	1.03	0.00	0.00	0.00	2.10	0.00	0.00
151	ER23a	ExonRegion	0	3.27	1.71	0.00	0.42	2.95	0.00	0.00
152	E23a_E24a	KnownJunction	0	1.99	1.10	0.00	0.00	2.05	0.00	0.00
153	ER24a	ExonRegion	0	2.84	2.73	0.62	2.32	2.39	1.71	0.31
154	E24a_E25a	KnownJunction	0	1.79	0.00	0.00	0.00	0.00	0.00	0.00
155	ER25a	ExonRegion	0	1.88	2.54	0.58	1.85	2.07	1.96	0.50