Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PLD1	Gene	0	76.07	2.44	21.80	5.12	7.28	48.14	51.86
2	340989	Transcript	0	4.00	0.00	1.32	0.00	0.00	0.00	0.46
3	356327	Transcript	0	66.44	4.49	12.32	0.00	7.33	64.35	51.18
4	351298	Transcript	0	0	0	0	0	0	0	0
5	342215	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	9.84	2.12	0.00	0.16	1.52	2.17	9.69
7	E1a_E2a	KnownJunction	1	20.13	3.26	0.72	0.00	0.95	4.23	22.49
8	I1_AR4	ActiveIntronRegion	1	4.90	1.93	4.85	6.73	0.43	20.55	10.79
9	ER2a	ExonRegion	0	25.56	4.95	12.31	6.37	2.29	41.95	35.52
10	E2a_E3a	KnownJunction	0	37.55	6.15	19.69	4.50	5.35	51.46	40.64
11	ER3a	ExonRegion	0	74.07	4.66	24.80	7.08	3.46	50.40	45.76
12	E3a_E4a	KnownJunction	0	96.32	4.05	26.43	6.66	3.09	49.79	42.64
13	ER4a	ExonRegion	0	141.02	7.75	39.27	9.55	5.10	72.58	69.20
14	E4a_E5a	KnownJunction	0	134.25	5.04	32.38	5.20	2.21	77.80	65.97
15	ER5a	ExonRegion	0	102.98	1.65	27.64	2.58	4.17	64.97	54.78
16	E5a_E6a	KnownJunction	0	96.38	0.00	30.31	2.60	9.82	50.33	63.67
17	ER6a	ExonRegion	0	102.31	3.18	30.25	2.38	10.21	49.54	65.49
18	E6a_E7a	KnownJunction	0	86.00	5.75	20.36	1.08	6.78	42.10	60.66
19	ER7a	ExonRegion	0	81.09	5.89	21.78	5.83	4.27	44.76	59.67
20	E7a_E8a	KnownJunction	0	69.51	1.52	22.02	9.51	5.37	37.36	48.66
21	ER8a	ExonRegion	0	100.00	5.85	27.17	7.58	6.82	32.67	54.65
22	E8a_E9a	KnownJunction	0	102.23	5.44	25.49	9.89	10.79	44.73	59.58
23	ER9a	ExonRegion	0	90.63	1.85	23.66	4.21	7.39	36.29	52.55
24	E9a_E10a	KnownJunction	0	65.44	0.00	24.65	2.98	6.20	37.98	47.04
25	E10_Aa	NovelBoundary	1	27.07	0.00	14.40	0.00	2.74	0.00	0.00
26	ER10a	ExonRegion	0	103.43	3.16	30.72	4.60	7.76	47.11	59.80
27	E10_Da	NovelBoundary	1	56.28	0.00	15.86	0.00	1.80	0.00	0.00
28	E10a_E11a	KnownJunction	0	132.40	7.17	37.09	8.86	9.36	56.79	70.78
29	ER11a	ExonRegion	0	160.69	7.19	40.78	9.20	11.45	49.13	88.92
30	E11a_E12a	KnownJunction	0	198.86	8.83	42.38	11.65	11.57	49.37	80.83
31	ER12a	ExonRegion	0	168.20	5.60	39.26	7.62	11.72	54.23	89.44
32	E12a_E13a	KnownJunction	0	144.87	1.31	27.02	8.70	8.64	34.95	86.72
33	ER13a	ExonRegion	0	149.76	2.24	32.58	5.44	9.81	58.48	89.49
34	E13a_E14a	KnownJunction	0	92.85	3.73	27.19	2.60	8.76	54.24	68.78
35	ER14a	ExonRegion	0	74.56	3.92	23.07	5.17	6.70	42.61	61.08
36	E14a_E15a	KnownJunction	0	49.35	0.00	16.05	2.84	0.97	29.27	28.45
37	E14a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER15a	ExonRegion	0	91.69	0.91	25.11	3.50	7.08	46.66	60.94
39	E15a_E16a	KnownJunction	0	4.46	0.00	6.21	0.00	0.00	4.34	5.66
40	E15a_E17a	KnownJunction	0	66.44	4.49	12.32	0.00	7.33	64.35	51.18
41	ER16a	ExonRegion	0	4.49	0.00	3.83	0.00	0.00	5.93	3.92
42	E16a_E17a	KnownJunction	0	5.36	0.00	3.43	0.00	0.00	3.94	0.77
43	ER17a	ExonRegion	0	96.07	3.14	29.95	4.12	6.89	53.41	71.68
44	E17a_E18a	KnownJunction	0	93.15	5.78	21.79	4.69	6.45	51.83	59.96
45	ER18a	ExonRegion	0	54.97	4.87	20.25	2.70	6.47	56.49	61.89
46	E18a_E19a	KnownJunction	0	60.95	5.02	23.70	5.15	4.45	55.88	77.55
47	ER19a	ExonRegion	0	87.51	6.02	24.39	8.38	9.25	48.92	67.22
48	E19a_E20a	KnownJunction	0	62.69	3.70	24.83	7.91	9.89	42.53	61.32
49	ER20a	ExonRegion	0	67.66	4.53	23.52	5.94	7.78	51.36	57.13
50	E20a_E21a	KnownJunction	0	93.28	1.60	32.16	5.15	5.33	44.89	57.40
51	ER21a	ExonRegion	0	86.83	0.41	28.81	10.80	9.48	61.24	60.90
52	E21a_E22a	KnownJunction	0	61.74	0.00	21.60	4.28	10.81	38.03	46.22
53	ER22a	ExonRegion	0	79.52	0.68	23.78	6.25	9.26	66.25	68.64
54	E22a_E23a	KnownJunction	0	92.33	4.26	18.16	13.60	6.22	69.71	65.21
55	ER23a	ExonRegion	0	107.44	2.96	22.08	13.57	7.09	79.22	78.90
56	E23a_E24a	KnownJunction	0	78.96	1.63	23.65	7.10	9.52	70.62	71.99
57	ER24a	ExonRegion	0	100.15	2.43	26.96	6.82	10.25	77.76	89.49
58	E24a_E25a	KnownJunction	0	114.89	0.00	18.01	8.26	14.64	67.29	69.48
59	ER25a	ExonRegion	0	83.64	1.78	22.24	7.79	9.43	60.97	71.31
60	E25a_E26a	KnownJunction	0	5.26	0.00	1.60	0.00	0.00	0.00	0.80
61	E25a_E27a	KnownJunction	0	55.26	0.00	11.75	5.66	7.42	56.82	57.57
62	ER26a	ExonRegion	0	2.73	0.00	1.04	0.00	0.00	0.00	0.12
63	ER27a	ExonRegion	0	71.73	0.79	23.70	4.90	9.35	63.01	54.25
64	E27a_E28a	KnownJunction	0	94.58	0.00	31.90	5.04	12.17	64.61	50.80
65	ER28a	ExonRegion	0	62.96	1.38	18.14	4.43	7.70	45.19	41.62
66	IG29_AR4	ActiveIntergenicRegion	0	9.77	0.00	1.34	0.00	0.20	2.73	2.91
67	IG29_SR4	SilentIntergenicRegion	0	10.00	0.00	0.88	0.00	0.00	2.43	1.02
68	IG29_SR2	SilentIntergenicRegion	0	16.92	0.24	2.62	0.91	0.11	7.36	4.23
69	IG29_AR1	ActiveIntergenicRegion	0	11.78	0.16	1.48	1.65	0.08	11.71	3.56