Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	IFT122	Gene	0	45.73	12.36	36.45	17.24	78.63	19.28	26.78
2	349441	Transcript	0	35.24	8.02	17.09	7.01	53.22	15.40	16.82
3	296266	Transcript	0	1.89	0.47	3.71	0.00	1.12	0.00	1.16
4	347300	Transcript	0	0	0	0	0	0	0	0
5	348417	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	9.99	6.33	8.79	7.23	29.07	9.30	6.03
7	E1a_E2a	KnownJunction	0	33.85	7.22	25.48	6.45	62.80	14.47	23.12
8	ER2a	ExonRegion	0	29.61	7.92	36.33	9.57	55.23	20.31	17.76
9	E2a_E3a	KnownJunction	1	31.29	15.16	51.26	9.08	60.51	12.17	18.43
10	ER3a	ExonRegion	0	35.90	16.95	38.63	14.70	68.18	17.57	25.64
11	E3a_E4a	KnownJunction	0	29.71	11.06	18.14	14.33	91.61	15.54	18.92
12	E3a_E7a	KnownJunction	0	3.39	4.62	7.72	1.14	40.67	2.68	5.06
13	ER4a	ExonRegion	0	38.79	11.96	25.74	12.80	85.93	9.84	17.26
14	E4a_E5a	KnownJunction	0	0.60	1.26	3.38	0.00	0.00	0.00	2.15
15	E4a_E6a	KnownJunction	0	34.38	8.46	25.35	10.76	64.66	9.84	17.26
16	ER5a	ExonRegion	0	5.07	0.13	3.25	0.00	2.24	0.00	1.34
17	E5a_E6a	KnownJunction	0	0.00	0.00	4.50	0.00	1.13	0.00	0.00
18	ER6a	ExonRegion	0	31.92	6.99	26.88	9.81	46.49	10.33	20.28
19	E6a_E7a	KnownJunction	0	20.36	8.91	24.66	8.13	32.48	8.68	19.78
20	ER7a	ExonRegion	0	30.19	10.15	30.54	11.54	64.87	14.46	22.11
21	E7a_E8a	KnownJunction	0	39.56	4.89	34.59	14.33	70.50	15.70	22.82
22	ER8a	ExonRegion	0	37.28	7.22	29.57	15.89	49.08	15.60	22.46
23	E8a_E9a	KnownJunction	0	1.89	0.00	0.89	2.36	4.13	3.00	0.89
24	E8a_E10a	KnownJunction	0	24.90	4.65	20.98	10.84	35.06	1.23	17.07
25	ER9a	ExonRegion	0	3.11	1.22	1.44	2.08	7.81	5.20	1.19
26	E9a_E10a	KnownJunction	0	1.72	1.50	1.34	1.25	5.23	0.00	0.87
27	ER10a	ExonRegion	0	23.53	10.90	32.94	15.05	55.14	8.02	17.38
28	E10a_E11a	KnownJunction	0	33.58	14.63	27.30	13.44	59.61	12.84	21.18
29	ER11a	ExonRegion	0	40.30	11.63	37.85	13.43	61.65	16.05	21.31
30	E11a_E12a	KnownJunction	1	51.72	3.70	41.47	8.61	83.08	16.88	20.06
31	ER12a	ExonRegion	0	55.20	11.48	53.00	14.19	77.81	15.64	28.34
32	E12a_E13a	KnownJunction	0	58.16	10.85	50.22	16.44	69.27	13.08	21.57
33	ER13a	ExonRegion	0	65.75	14.82	64.27	18.58	97.00	20.21	29.30
34	E13a_E14a	KnownJunction	1	54.29	17.76	57.52	24.57	66.25	8.76	23.70
35	ER14a	ExonRegion	0	47.13	11.95	44.23	13.41	87.26	16.16	29.27
36	E14a_E15a	KnownJunction	0	63.09	9.54	44.95	16.39	130.29	18.47	38.72
37	E15_Aa	NovelBoundary	0	11.80	23.20	3.66	57.84	1.18	34.54	5.03
38	I14_AR1	ActiveIntronRegion	0	1.58	2.49	4.98	10.10	0.57	9.75	0.67
39	ER15a	ExonRegion	0	59.91	27.74	51.49	48.69	103.51	42.15	40.57
40	E15_Da	NovelBoundary	0	18.84	15.97	14.04	34.05	2.12	28.73	4.13
41	E15a_E16a	KnownJunction	0	62.55	13.74	48.66	22.00	125.82	24.12	36.56
42	E16_Aa	NovelBoundary	0	9.06	8.33	6.01	13.52	0.00	2.68	7.24
43	ER16a	ExonRegion	0	47.53	18.31	43.58	21.69	96.17	18.37	32.45
44	E16a_E17a	KnownJunction	0	46.10	20.44	35.16	8.59	82.00	9.43	25.55
45	E17_Aa	NovelBoundary	0	29.89	12.16	23.98	11.78	8.51	4.40	8.86
46	ER17a	ExonRegion	0	63.09	16.99	56.65	19.78	84.64	20.58	35.50
47	E17_Da	NovelBoundary	0	5.31	6.46	5.43	9.02	5.58	5.23	5.20
48	E17a_E18a	KnownJunction	0	38.57	7.99	52.16	13.57	86.01	22.03	23.09
49	E17a_E19a	NovelJunction	1	13.62	3.94	3.68	5.23	8.37	0.00	5.62
50	ER18a	ExonRegion	0	67.07	14.60	51.72	14.36	77.64	22.29	28.47
51	E18a_E19a	KnownJunction	0	67.13	13.61	40.54	12.73	63.46	15.60	24.71
52	E19_Aa	NovelBoundary	1	9.20	13.14	7.65	9.35	25.36	0.00	32.06
53	ER19a	ExonRegion	0	61.57	17.47	56.95	15.57	94.99	23.10	35.20
54	E19a_E20a	KnownJunction	0	67.91	14.48	53.14	30.69	109.55	15.84	34.02
55	E20_Aa	NovelBoundary	1	11.28	29.87	8.61	8.89	27.29	7.26	16.21
56	ER20a	ExonRegion	0	47.95	12.47	43.57	26.67	96.57	19.03	36.11
57	E20a_E21a	KnownJunction	0	51.15	9.01	39.59	23.11	84.37	16.24	31.90
58	ER21a	ExonRegion	0	42.61	9.72	33.08	14.44	83.21	19.47	32.82
59	E21a_E22a	KnownJunction	0	46.11	6.86	35.22	18.34	93.85	19.38	32.98
60	E22_Aa	NovelBoundary	0	4.52	8.54	2.77	0.00	0.88	0.00	0.76
61	ER22a	ExonRegion	0	52.75	11.68	36.50	12.81	148.50	20.31	40.91
62	E22a_E23a	KnownJunction	0	65.34	8.83	43.71	14.52	180.80	27.60	42.81
63	ER23a	ExonRegion	0	96.31	18.92	58.58	27.75	163.78	42.19	55.37
64	E23a_E24a	KnownJunction	1	37.59	4.86	14.10	4.61	45.30	17.47	17.91
65	E23a_E24b	KnownJunction	0	94.35	17.08	51.07	21.59	113.74	32.43	42.36
66	ER24a	ExonRegion	0	64.74	14.58	29.47	15.28	73.70	26.05	27.49
67	ER24b	ExonRegion	0	132.72	22.89	68.21	34.80	193.85	49.26	50.86
68	E24a_E25a	KnownJunction	0	97.60	19.91	62.51	19.29	180.41	41.14	56.87
69	ER25a	ExonRegion	0	103.08	22.32	64.31	21.27	167.06	36.48	47.92
70	E25_Da	NovelBoundary	1	32.90	3.10	15.84	5.47	17.87	3.91	2.39
71	E25a_E26a	KnownJunction	0	77.76	6.38	46.27	14.36	116.46	16.70	33.65
72	I25	Intron	1	16.14	3.30	7.68	3.24	5.74	3.53	1.67
73	I25_AR1	ActiveIntronRegion	0	16.15	3.30	7.69	3.25	5.75	3.54	1.67
74	E26_Aa	NovelBoundary	1	30.29	4.33	10.98	4.77	8.71	5.25	3.78
75	ER26a	ExonRegion	0	68.53	11.05	41.23	19.91	99.46	19.73	37.17
76	E26_Da	NovelBoundary	0	28.67	5.65	10.59	12.62	12.75	3.81	8.48
77	E26a_E27a	KnownJunction	0	58.92	7.33	34.58	10.16	94.59	20.15	30.15
78	E27_Aa	NovelBoundary	0	17.66	10.88	7.79	7.21	13.30	8.36	4.96
79	ER27a	ExonRegion	0	46.69	14.31	25.94	27.98	86.10	21.90	37.02
80	E27a_E28a	KnownJunction	0	44.36	21.20	20.91	23.08	60.17	15.54	26.48
81	ER28a	ExonRegion	0	45.90	14.49	30.98	27.22	97.52	22.43	27.35
82	E28a_E29a	KnownJunction	1	55.41	11.59	32.62	36.11	107.61	20.10	28.12
83	ER29a	ExonRegion	0	32.75	19.76	24.87	22.31	63.70	27.11	23.06
84	E29a_E30a	KnownJunction	1	31.38	17.13	23.62	13.46	77.53	39.48	21.02
85	ER30a	ExonRegion	0	32.92	8.67	26.02	15.55	60.30	23.19	20.17
86	E30a_E31a	KnownJunction	0	13.08	3.94	16.11	14.41	31.79	14.12	15.76
87	ER31a	ExonRegion	0	11.90	3.86	8.63	7.95	21.13	7.56	9.37