Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KALRN	Gene	0	14.38	8.31	7.71	4.03	5.03	4.26	0.66
2	240874	Transcript	0	2.36	0.35	1.25	2.08	3.25	0.38	0.03
3	360013	Transcript	0	13.37	7.57	10.52	1.14	4.10	7.77	0.00
4	393499	Transcript	0	0.13	0.00	0.20	0.12	0.00	0.73	0.00
5	393501	Transcript	0	6.75	3.94	7.12	2.20	7.33	0.83	0.00
6	393496	Transcript	0	8.29	7.84	3.35	1.46	1.93	2.63	0.97
7	291478	Transcript	0	1.02	4.08	0.00	0.68	0.28	0.34	0.47
8	354186	Transcript	0	0	0	0	0	0	0	0
9	ER1a	ExonRegion	0	0.71	0.55	0.01	0.00	0.25	0.00	0.00
10	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	11.62	5.09	7.52	1.16	5.08	3.06	0.00
12	E2a_E3a	KnownJunction	0	20.73	9.12	17.19	4.17	10.72	3.97	0.00
13	ER3a	ExonRegion	0	22.03	6.23	14.56	5.92	6.77	11.16	0.45
14	E3a_E4a	KnownJunction	0	20.76	5.31	11.96	6.91	4.29	13.24	0.00
15	ER4a	ExonRegion	0	19.24	6.66	13.53	7.56	7.60	7.96	0.00
16	E4a_E5a	KnownJunction	0	15.09	9.30	7.46	6.10	6.27	5.60	0.00
17	ER5a	ExonRegion	0	12.56	6.83	10.12	8.33	4.38	5.86	0.00
18	E5a_E6a	KnownJunction	0	18.38	5.12	11.80	7.23	4.13	6.30	0.00
19	ER6a	ExonRegion	0	16.67	3.45	15.22	7.30	10.12	7.59	0.00
20	E6a_E7a	KnownJunction	0	11.33	7.25	9.81	11.24	8.76	8.31	0.00
21	ER7a	ExonRegion	0	13.03	8.99	8.96	5.68	6.78	7.11	0.00
22	E7a_E8a	KnownJunction	0	25.52	10.17	11.04	9.13	13.32	6.78	0.00
23	ER8a	ExonRegion	0	18.50	10.21	9.29	7.15	9.91	9.23	0.00
24	E8a_E9a	KnownJunction	0	20.16	9.88	15.00	9.08	8.71	11.74	0.00
25	ER9a	ExonRegion	0	17.45	5.10	9.77	4.71	8.54	6.54	0.00
26	E9a_E10a	KnownJunction	0	17.61	5.73	8.97	9.92	7.19	1.10	0.00
27	ER10a	ExonRegion	0	22.01	6.78	9.24	4.03	8.23	1.99	0.00
28	E10a_E11c	KnownJunction	0	22.30	6.96	14.37	4.58	5.97	1.31	0.00
29	ER11a	ExonRegion	0	0.05	0.00	0.00	0.36	0.00	0.21	0.00
30	E11_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
31	E11_Ac	KnownBoundary	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
32	ER11b	ExonRegion	0	1.96	0.36	0.71	0.25	0.53	1.29	0.00
33	ER11c	ExonRegion	0	23.35	8.16	11.26	5.27	10.46	1.92	0.00
34	E11a_E12a	KnownJunction	0	24.73	9.30	20.55	8.83	5.99	2.81	0.00
35	ER12a	ExonRegion	0	21.19	10.84	10.61	7.71	6.60	7.05	0.29
36	E12_Da	KnownBoundary	0	13.95	5.41	9.11	5.12	2.24	6.06	0.00
37	E12a_E13a	KnownJunction	0	12.67	7.88	13.65	4.39	14.66	1.66	0.00
38	ER12b	ExonRegion	0	10.03	3.58	8.44	6.87	2.91	2.14	0.00
39	E12b_E13a	KnownJunction	0	9.13	3.73	7.16	7.88	4.43	1.37	0.72
40	ER13a	ExonRegion	0	14.06	8.87	9.73	6.37	8.02	3.97	0.59
41	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.66	0.00
42	E13a_E15a	KnownJunction	0	10.06	5.44	4.71	9.97	5.58	4.23	0.00
43	ER14a	ExonRegion	0	0.34	0.00	0.60	0.00	0.00	0.32	0.00
44	ER15a	ExonRegion	0	24.26	6.63	10.01	8.81	9.50	3.41	0.06
45	E15a_E16a	KnownJunction	0	32.53	5.75	15.78	4.12	20.08	4.18	0.70
46	ER16a	ExonRegion	0	35.81	5.52	14.63	7.14	9.97	1.91	0.43
47	E16a_E17a	KnownJunction	0	21.23	2.52	12.33	2.74	4.38	0.00	0.77
48	ER17a	ExonRegion	0	12.73	1.56	7.87	1.71	8.09	0.41	0.15
49	E17a_E18a	KnownJunction	0	0.80	2.65	6.25	3.31	3.30	2.73	0.00
50	ER18a	ExonRegion	0	9.14	5.62	6.30	7.58	4.59	4.99	0.45
51	E18a_E19a	KnownJunction	0	17.19	6.62	7.49	8.61	3.43	3.03	0.54
52	ER19a	ExonRegion	0	20.59	4.99	8.71	6.73	5.26	2.19	0.93
53	E19a_E20a	KnownJunction	0	19.83	7.54	9.80	7.29	2.26	2.71	0.83
54	ER20a	ExonRegion	0	14.50	4.12	10.09	4.29	7.39	0.99	0.16
55	E20a_E21a	KnownJunction	0	21.38	2.92	12.33	4.25	1.96	0.00	0.00
56	ER21a	ExonRegion	0	16.62	3.84	8.18	5.63	4.23	1.99	0.44
57	E21a_E22a	KnownJunction	0	22.23	4.33	10.98	2.41	6.13	4.26	0.00
58	ER22a	ExonRegion	0	34.54	2.97	15.19	4.13	10.49	3.45	0.00
59	E22a_E23a	KnownJunction	0	28.67	3.91	12.33	4.55	8.74	2.73	0.00
60	ER23a	ExonRegion	0	27.66	5.76	12.24	3.97	10.59	4.01	0.00
61	E23a_E24a	KnownJunction	0	12.47	4.18	7.19	6.80	8.14	1.13	0.00
62	ER24a	ExonRegion	0	15.43	3.51	7.42	3.12	8.55	2.88	0.00
63	E24a_E25a	KnownJunction	0	17.96	4.94	7.44	4.25	7.40	5.36	0.00
64	ER25a	ExonRegion	0	17.52	4.91	16.10	5.10	7.17	3.82	0.45
65	E25a_E26a	KnownJunction	0	13.99	4.47	17.29	7.04	9.94	1.53	0.89
66	ER26a	ExonRegion	0	21.94	4.59	10.46	7.80	7.02	4.54	0.44
67	E26a_E27a	KnownJunction	0	28.71	6.36	11.05	11.73	13.16	5.57	0.89
68	ER27a	ExonRegion	0	24.78	5.94	12.73	8.78	8.47	4.43	0.35
69	E27a_E28a	KnownJunction	0	16.49	4.81	11.40	5.04	5.46	7.85	0.00
70	ER28a	ExonRegion	0	20.18	4.52	9.49	4.32	7.49	6.53	0.00
71	E28a_E29a	KnownJunction	0	22.88	2.81	5.10	5.61	11.13	6.49	0.00
72	ER29a	ExonRegion	0	20.82	6.23	9.62	6.70	11.44	4.97	0.12
73	E29a_E30a	KnownJunction	0	14.99	5.81	5.75	6.58	8.48	4.98	0.69
74	ER30a	ExonRegion	0	15.64	3.97	9.73	6.29	8.37	2.11	0.36
75	E30_Da	KnownBoundary	0	0.65	0.00	0.00	0.00	0.00	0.00	0.00
76	E30a_E31a	KnownJunction	0	12.47	2.92	6.50	1.68	6.06	1.15	0.00
77	ER30b	ExonRegion	0	0.84	0.00	0.59	0.00	0.00	0.00	0.00
78	ER31a	ExonRegion	0	16.61	4.31	10.05	3.75	10.79	1.07	0.27
79	E31a_E32a	KnownJunction	0	23.02	2.26	10.86	1.11	10.63	3.94	0.00
80	ER32a	ExonRegion	0	25.77	2.22	13.53	1.94	11.52	4.60	0.00
81	E32a_E33a	KnownJunction	0	27.69	2.21	11.51	2.68	7.81	2.22	0.00
82	ER33a	ExonRegion	0	30.00	4.55	14.45	3.17	10.77	5.93	0.72
83	E33a_E34a	KnownJunction	0	21.31	6.12	9.69	3.36	5.97	5.41	0.00
84	ER34a	ExonRegion	0	17.53	5.58	9.60	6.14	9.62	4.83	0.50
85	E34a_E36a	KnownJunction	0	2.00	0.00	1.16	3.36	3.18	0.00	0.00
86	E34a_E37a	KnownJunction	0	13.37	7.57	10.52	1.14	4.10	7.77	0.00
87	ER35a	ExonRegion	0	0.28	0.41	0.24	0.00	0.19	0.44	0.00
88	E35a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	ER36a	ExonRegion	0	2.73	0.70	1.34	0.79	3.31	0.77	0.07
90	ER37a	ExonRegion	0	11.19	4.09	6.32	2.99	3.14	1.28	0.01
91	E37a_E39a	KnownJunction	0	7.96	2.92	4.86	1.16	0.95	0.00	0.00
92	ER38a	ExonRegion	0	1.02	4.08	0.00	0.68	0.28	0.34	0.47
93	E38_Ab	KnownBoundary	0	0.73	7.43	0.00	0.00	0.00	4.90	0.76
94	ER38b	ExonRegion	0	1.02	12.06	0.61	2.21	0.05	0.54	1.06
95	E38a_E39a	KnownJunction	0	2.84	23.36	0.00	0.00	0.00	0.00	1.78
96	ER39a	ExonRegion	0	11.68	28.25	7.31	5.40	3.03	7.36	2.95
97	E39a_E40a	KnownJunction	0	14.82	19.76	3.03	8.18	4.36	5.84	3.98
98	ER40a	ExonRegion	0	18.40	24.67	8.61	5.57	4.07	9.07	2.85
99	E40a_E41a	KnownJunction	0	1.50	0.00	0.00	0.00	2.05	0.00	0.00
100	E40a_E42a	KnownJunction	0	8.40	15.13	5.42	7.26	3.09	19.78	2.78
101	ER41a	ExonRegion	0	1.35	1.16	0.00	0.00	2.01	0.00	0.00
102	E41a_E42a	KnownJunction	0	1.75	1.34	0.00	0.00	4.15	0.00	0.00
103	ER42a	ExonRegion	0	21.79	28.03	9.51	8.54	8.62	11.94	2.21
104	E42a_E43a	KnownJunction	0	14.40	11.98	9.43	10.16	10.58	11.18	3.83
105	ER43a	ExonRegion	0	22.17	24.33	10.60	8.10	6.83	8.33	3.23
106	E43a_E44a	KnownJunction	0	28.54	30.50	12.01	8.89	3.32	5.15	2.36
107	ER44a	ExonRegion	0	41.36	27.73	12.26	6.37	12.91	10.28	4.50
108	E44a_E45a	KnownJunction	0	41.74	30.11	18.09	4.96	12.89	10.13	2.41
109	ER45a	ExonRegion	0	34.76	29.82	14.65	7.41	12.77	10.60	3.38
110	E45a_E46a	KnownJunction	0	30.14	29.40	10.76	12.14	10.51	6.99	4.08
111	ER46a	ExonRegion	0	52.08	30.36	15.20	7.95	12.47	9.02	3.69
112	E46a_E47a	KnownJunction	0	54.18	42.95	18.94	4.63	12.93	12.11	4.66
113	ER47a	ExonRegion	0	42.74	36.43	17.36	7.56	13.95	9.32	4.24
114	E47a_E48a	KnownJunction	0	38.40	32.55	13.69	10.78	14.09	10.56	2.36
115	ER48a	ExonRegion	0	52.13	40.04	20.33	10.46	16.59	10.53	2.62
116	E48a_E49a	KnownJunction	0	50.10	37.57	23.29	8.80	14.96	9.38	2.58
117	ER49a	ExonRegion	0	48.09	44.70	17.88	10.23	13.38	11.84	4.42
118	E49a_E50a	KnownJunction	0	35.20	49.89	11.88	7.31	10.54	10.48	2.85
119	ER50a	ExonRegion	0	26.32	38.43	12.87	10.41	13.38	12.39	4.33
120	E50a_E51a	KnownJunction	0	13.60	42.24	9.76	8.07	13.85	12.30	7.15
121	ER51a	ExonRegion	0	12.87	29.19	10.59	5.65	11.36	15.26	4.88
122	E51a_E52a	KnownJunction	0	9.46	16.84	8.81	4.88	6.39	9.11	4.51
123	ER52a	ExonRegion	0	13.38	17.53	10.33	4.28	6.29	9.91	3.17
124	E52a_E53a	KnownJunction	0	2.10	0.00	1.41	2.71	0.00	0.00	0.59
125	E52a_E53b	KnownJunction	0	15.37	16.60	8.41	2.44	1.18	4.05	2.41
126	ER53a	ExonRegion	0	5.96	6.07	3.73	3.43	0.81	1.23	1.52
127	ER53b	ExonRegion	0	21.09	22.95	8.29	6.07	5.29	6.31	2.70
128	E53_Da	KnownBoundary	0	20.76	23.78	5.66	1.19	9.06	4.40	0.89
129	E53a_E54a	KnownJunction	0	11.98	7.17	3.91	3.22	0.00	1.53	0.00
130	ER53c	ExonRegion	0	17.52	14.33	4.76	3.40	6.35	6.03	1.48
131	ER54a	ExonRegion	0	11.72	5.46	5.91	2.62	2.16	3.97	0.00
132	E54a_E55a	KnownJunction	0	8.73	4.89	3.69	1.57	3.20	3.16	0.00
133	ER55a	ExonRegion	0	5.15	3.77	5.48	1.02	3.27	2.78	0.00
134	E55a_E56a	KnownJunction	0	2.07	3.15	4.61	0.00	2.01	1.66	0.00
135	E56a_E57a	KnownJunction	0	12.73	7.22	5.55	0.00	2.10	0.00	0.77
136	ER56a	ExonRegion	0	9.47	5.42	5.73	0.00	1.88	1.23	0.00
137	ER57a	ExonRegion	0	16.72	7.11	11.14	2.31	3.60	2.52	0.82
138	E57a_E58a	KnownJunction	0	20.85	10.59	13.97	1.25	1.15	8.95	0.72
139	ER58a	ExonRegion	0	20.96	10.71	16.34	2.21	2.75	6.48	0.22
140	E58a_E59a	KnownJunction	0	19.56	8.49	17.16	0.00	4.29	9.43	0.70
141	ER59a	ExonRegion	0	13.18	5.64	10.34	2.24	2.15	3.07	0.67
142	E59a_E60a	KnownJunction	0	15.42	5.41	7.50	2.38	1.18	4.98	0.00
143	ER60a	ExonRegion	0	8.88	2.98	3.99	3.11	1.62	2.38	0.31
144	E60a_E61a	KnownJunction	0	17.21	1.63	2.97	2.95	2.05	2.97	0.00
145	ER61a	ExonRegion	0	11.58	6.27	5.42	3.82	1.00	3.15	0.00
146	E61a_E62a	KnownJunction	0	5.02	8.77	5.68	4.25	1.78	1.66	0.00
147	ER62a	ExonRegion	0	9.26	9.97	7.33	2.67	2.12	3.28	0.00
148	E62a_E63a	KnownJunction	0	3.84	2.89	8.03	2.68	1.18	5.84	0.00
149	ER63a	ExonRegion	0	12.58	7.90	9.01	2.64	1.72	8.46	0.00
150	E63a_E64a	KnownJunction	0	11.45	11.56	7.66	1.49	2.24	5.04	0.00
151	ER64a	ExonRegion	0	13.79	5.84	8.97	3.67	1.73	3.93	0.09