Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TFDP2	Gene	0	63.18	50.60	18.99	11.31	306.03	27.11	78.07
2	317104	Transcript	0	1.47	0.00	0.76	0.00	0.95	0.00	0.00
3	397991	Transcript	0	0	0	0	0	0	0	0
4	310282	Transcript	0	8.78	15.70	6.63	4.67	18.79	10.53	18.90
5	408980	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	2.86	7.00	0.41	2.40	2.88	4.88	7.24
7	E1a_E2a	KnownJunction	1	7.54	12.03	2.51	0.00	7.84	11.15	14.03
8	ER2a	ExonRegion	0	29.05	22.24	13.17	6.13	35.72	19.60	45.92
9	E2a_E4a	KnownJunction	1	45.40	35.60	23.28	1.65	56.20	31.17	72.19
10	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER4a	ExonRegion	1	32.21	41.14	20.96	3.96	51.06	24.06	64.92
12	E4a_E5a	KnownJunction	0	3.04	1.39	1.78	0.00	7.28	0.00	14.03
13	E4a_E6a	KnownJunction	0	17.56	31.39	13.26	9.35	37.58	21.06	37.81
14	ER5a	ExonRegion	1	3.75	3.78	2.17	0.00	7.98	0.11	25.52
15	E5_Da	NovelBoundary	1	20.50	4.12	131.06	62.15	2.19	106.31	9.26
16	E5a_E6a	KnownJunction	1	3.49	4.12	1.87	0.00	5.39	0.00	23.17
17	ER6a	ExonRegion	0	50.88	55.12	25.34	9.65	151.76	27.51	79.15
18	E6a_E7a	KnownJunction	0	41.27	43.69	22.78	4.77	84.88	27.28	67.17
19	E6a_E9a	NovelJunction	0	2.25	8.72	2.72	2.98	13.69	2.47	3.04
20	ER6b	ExonRegion	1	44.19	41.31	25.06	2.49	86.25	26.97	69.15
21	ER7a	ExonRegion	0	57.04	56.94	21.43	6.16	288.33	24.68	72.70
22	E7a_E8a	KnownJunction	0	62.80	39.41	19.23	9.64	698.36	17.77	65.01
23	E7a_E9a	KnownJunction	0	1.47	0.00	0.76	0.00	0.95	0.00	0.00
24	ER8a	ExonRegion	0	73.18	49.53	27.70	12.76	505.50	27.38	81.25
25	E8a_E9a	KnownJunction	0	78.51	52.23	29.73	10.40	325.37	33.71	75.10
26	E9_Aa	NovelBoundary	1	7.48	1.42	5.85	4.69	4.56	13.99	0.56
27	ER9a	ExonRegion	0	92.46	75.02	30.47	18.57	437.18	40.36	101.80
28	E9_Da	NovelBoundary	1	6.88	2.26	3.43	9.40	1.18	12.01	0.79
29	E9a_E10a	KnownJunction	0	28.26	10.93	11.42	5.50	78.33	4.98	35.90
30	E9a_E10b	KnownJunction	0	54.88	44.03	12.44	7.94	300.89	24.63	62.94
31	ER10a	ExonRegion	0	44.95	21.26	14.73	7.48	164.80	12.26	58.52
32	ER10b	ExonRegion	0	77.42	57.57	20.08	11.88	410.50	28.33	101.91
33	E10a_E11a	KnownJunction	0	60.20	47.26	20.48	6.99	354.97	19.51	88.45
34	ER11a	ExonRegion	0	53.11	55.16	14.89	11.08	362.66	31.09	88.85
35	E11_Da	NovelBoundary	0	4.59	4.10	2.10	4.42	0.00	9.54	0.80
36	E11a_E12a	KnownJunction	0	58.08	67.78	12.40	14.55	405.55	44.35	92.39
37	I11_SR2	SilentIntronRegion	1	2.79	0.63	2.22	2.21	0.50	9.20	0.30
38	E12_Aa	NovelBoundary	1	25.92	1.37	7.40	2.36	0.00	3.64	1.92
39	ER12a	ExonRegion	0	99.37	84.56	24.47	18.38	555.07	40.32	113.20
40	E12_Da	NovelBoundary	0	4.34	6.54	0.00	7.59	2.31	11.28	0.85
41	E12a_E13a	KnownJunction	0	164.40	102.01	29.01	24.25	739.30	51.54	155.24
42	I12_AR1	ActiveIntronRegion	0	5.98	4.42	2.21	5.54	6.01	8.32	0.28
43	I12_SR3	SilentIntronRegion	1	11.78	1.40	3.08	3.67	4.35	9.48	1.37
44	I12_AR4	ActiveIntronRegion	1	12.71	1.49	3.56	4.97	4.82	8.72	0.66
45	E13_Aa	NovelBoundary	1	19.98	0.00	1.41	4.69	7.12	4.69	1.36
46	ER13a	ExonRegion	0	164.01	93.13	36.92	24.63	689.95	58.86	153.94
47	E13a_E14a	KnownJunction	0	182.50	86.07	34.50	18.56	770.56	58.40	155.12
48	ER14a	ExonRegion	0	103.49	70.66	29.89	13.96	536.41	41.12	137.26
49	E14a_E15a	KnownJunction	0	56.73	60.77	17.95	10.32	294.94	22.97	81.36
50	E15_Aa	NovelBoundary	1	3.89	0.00	1.64	6.31	4.29	10.34	1.43
51	ER15a	ExonRegion	0	40.60	43.60	12.85	12.25	274.72	16.91	61.39
52	ER15b	ExonRegion	0	11.33	5.33	3.47	5.15	75.68	2.10	15.12
53	IG50	Intergenic	0	17.31	7.85	7.05	6.78	45.28	10.29	10.72
54	IG50_AR12	ActiveIntergenicRegion	0	49.03	27.50	16.47	13.71	177.04	13.97	37.93
55	IG50_SR11	SilentIntergenicRegion	0	53.97	23.18	16.01	10.03	149.82	15.09	31.36
56	IG50_AR11	ActiveIntergenicRegion	0	29.62	12.31	10.25	6.43	76.82	11.30	22.04
57	IG50_SR10	SilentIntergenicRegion	0	6.30	9.66	6.37	4.46	21.32	6.20	10.60
58	IG50_AR10	ActiveIntergenicRegion	0	9.77	6.74	4.83	5.48	30.44	5.03	16.46
59	IG50_SR9	SilentIntergenicRegion	0	23.67	5.26	5.25	7.16	45.40	8.78	10.42
60	IG50_AR9	ActiveIntergenicRegion	0	6.53	4.72	2.35	4.89	28.01	4.83	4.50
61	IG50_SR8	SilentIntergenicRegion	0	10.32	6.33	8.98	3.99	48.43	13.74	13.13
62	IG50_AR8	ActiveIntergenicRegion	0	19.42	10.60	7.70	8.25	57.38	13.13	14.26
63	IG50_SR7	SilentIntergenicRegion	0	1.84	0.97	0.20	0.00	9.07	0.12	0.81
64	IG50_AR7	ActiveIntergenicRegion	0	43.31	20.01	14.02	11.06	132.03	25.30	26.96
65	IG50_SR6	SilentIntergenicRegion	0	13.64	6.16	5.87	2.07	62.84	13.43	6.75
66	IG50_AR6	ActiveIntergenicRegion	0	26.12	8.59	13.23	4.42	67.08	12.57	13.36
67	IG50_AR2	ActiveIntergenicRegion	0	10.91	3.85	7.67	12.60	6.72	27.54	6.15
68	IG50_SR2	SilentIntergenicRegion	0	8.18	4.09	4.65	9.04	9.93	15.56	4.27
69	IG50_SR1	SilentIntergenicRegion	0	9.14	4.70	8.18	4.81	12.11	20.00	1.74