Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C3orf15	Gene	0	7.09	14.13	12.41	20.82	10.21	33.27	0.03
2	273390	Transcript	0	0	0	0	0	0	0	0
3	264232	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	383667	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	383666	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	1.01	4.29	4.43	8.46	6.02	19.31	0.00
7	E1a_E2a	KnownJunction	0	0.00	2.29	1.19	4.42	1.18	11.20	0.00
8	E1a_E5a	NovelJunction	1	0.00	0.00	0.00	0.00	0.00	8.33	0.00
9	I1	Intron	0	4.97	7.71	6.56	7.12	2.68	5.34	0.06
10	I1_AR1	ActiveIntronRegion	0	3.47	8.12	3.39	4.89	0.52	6.89	0.00
11	I1_SR1	SilentIntronRegion	0	5.09	8.53	7.17	8.58	2.89	3.73	0.00
12	I1_SR2	SilentIntronRegion	0	4.47	7.68	7.58	6.75	3.72	6.45	0.21
13	E2_Aa	NovelBoundary	0	5.42	12.98	8.52	8.59	3.02	2.68	0.00
14	ER2a	ExonRegion	0	1.51	8.69	5.38	5.44	11.06	13.76	0.66
15	E2_Da	NovelBoundary	0	2.89	14.95	10.86	7.21	4.63	3.99	0.00
16	E2a_E4a	KnownJunction	0	0.58	3.55	7.11	9.02	14.92	12.19	0.00
17	I2_SR1	SilentIntronRegion	0	7.54	2.51	7.01	7.74	3.86	8.42	0.00
18	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E4_Aa	NovelBoundary	0	4.29	2.52	7.60	10.54	5.39	8.58	0.00
20	ER4a	ExonRegion	0	3.34	17.52	11.10	20.38	23.84	33.13	0.00
21	E4a_E5a	KnownJunction	0	6.66	29.74	7.73	29.91	15.77	33.18	0.00
22	ER5a	ExonRegion	0	6.53	22.16	15.96	33.33	16.25	44.33	0.00
23	E5a_E6a	KnownJunction	0	2.92	16.45	20.92	38.90	20.54	62.39	0.00
24	ER6a	ExonRegion	0	3.34	24.64	14.84	32.84	31.00	65.82	0.00
25	E6a_E7a	KnownJunction	0	4.37	29.95	10.89	24.68	36.86	64.11	0.00
26	E7_Aa	NovelBoundary	0	5.69	7.12	7.79	5.04	10.72	6.57	0.66
27	ER7a	ExonRegion	0	7.04	25.85	15.58	35.18	23.82	58.11	0.00
28	E7_Da	NovelBoundary	0	3.29	5.88	3.56	0.00	9.47	6.89	0.00
29	E7a_E8a	KnownJunction	0	2.17	22.72	8.46	26.77	10.97	50.84	0.00
30	ER8a	ExonRegion	0	7.53	16.78	11.59	21.93	10.13	37.10	0.00
31	E8a_E9a	KnownJunction	0	12.30	13.63	12.73	20.32	12.66	31.97	0.00
32	ER9a	ExonRegion	0	18.25	23.97	20.86	33.25	19.69	43.53	0.00
33	E9_Da	NovelBoundary	0	26.84	32.63	27.73	27.58	28.98	53.76	0.00
34	E9a_E13b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E9_Db	NovelBoundary	0	5.66	11.80	3.99	11.54	1.18	10.37	0.00
36	E9b_E10a	KnownJunction	0	8.38	22.36	19.57	19.32	18.17	35.91	0.00
37	ER9b	ExonRegion	0	17.65	27.77	24.87	20.04	21.92	44.27	0.00
38	I9	Intron	0	2.47	5.06	3.02	4.67	1.23	9.00	0.06
39	I9_AR1	ActiveIntronRegion	0	2.52	4.09	2.71	5.49	1.67	11.23	0.00
40	I9_SR1	SilentIntronRegion	0	2.35	4.25	3.75	4.86	1.19	7.98	0.15
41	I9_AR3	ActiveIntronRegion	0	2.55	6.99	2.97	4.22	1.20	9.61	0.02
42	E10_Aa	NovelBoundary	0	3.10	4.89	7.26	9.32	0.88	11.18	0.00
43	ER10a	ExonRegion	0	14.39	28.14	24.71	23.50	19.02	45.21	0.00
44	E10a_E11a	KnownJunction	0	9.78	31.47	24.59	30.13	18.60	48.19	0.00
45	E10a_E12a	NovelJunction	1	5.57	1.52	6.37	0.00	0.00	10.02	0.00
46	E11_Aa	NovelBoundary	1	2.84	0.00	4.45	2.74	2.28	13.53	0.00
47	ER11a	ExonRegion	0	11.38	27.36	25.32	28.28	16.81	60.15	0.00
48	E11a_E12a	KnownJunction	0	11.28	27.43	21.31	39.12	7.95	66.46	0.00
49	ER12a	ExonRegion	0	9.34	26.22	20.61	34.13	10.33	55.97	0.00
50	E12a_E13a	KnownJunction	0	3.94	20.05	22.33	29.23	10.56	48.45	0.00
51	E13_Ab	NovelBoundary	0	4.99	15.53	11.88	22.19	10.51	43.07	0.00
52	ER13a	ExonRegion	0	4.77	18.22	21.00	26.71	12.32	50.01	0.00
53	ER13b	ExonRegion	0	9.89	14.92	14.98	26.40	8.98	45.15	0.00
54	E13a_E14a	KnownJunction	0	13.40	14.74	12.07	33.81	7.61	37.52	0.00
55	ER14a	ExonRegion	0	8.00	15.21	12.58	29.70	9.21	39.53	0.00
56	E14a_E15a	KnownJunction	0	8.56	22.91	8.26	32.59	13.67	42.88	0.00
57	ER15a	ExonRegion	0	4.44	20.41	7.26	26.46	9.32	38.88	0.00
58	E15a_E16a	KnownJunction	0	1.57	23.36	10.50	20.94	11.69	45.43	0.00
59	ER16a	ExonRegion	0	5.99	16.27	13.90	23.07	10.60	34.41	0.00
60	E16_Da	NovelBoundary	0	0.00	8.25	1.98	9.29	2.24	16.70	0.00
61	E16a_E18a	KnownJunction	0	4.27	7.04	10.40	16.36	6.32	15.44	0.00
62	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER18a	ExonRegion	0	6.96	11.37	17.24	22.07	11.38	37.25	0.00
65	E18a_E19a	KnownJunction	0	12.48	12.98	16.73	22.92	16.81	44.89	0.00
66	ER19a	ExonRegion	0	11.34	15.60	17.21	26.73	14.23	42.96	0.00
67	E19_Da	NovelBoundary	0	2.84	8.14	1.48	0.00	0.00	1.26	0.00
68	E19a_E20a	KnownJunction	0	15.15	12.37	16.71	28.91	7.65	32.43	0.00
69	ER20a	ExonRegion	0	11.84	7.07	15.88	18.27	10.48	29.76	0.26
70	E20_Da	KnownBoundary	0	13.42	13.42	12.62	17.74	9.15	25.89	0.00
71	ER20b	ExonRegion	0	5.98	9.25	9.52	16.62	5.15	24.68	0.03