Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF123	Gene	0	43.26	32.72	49.18	35.98	60.94	20.41	87.01
2	389066	Transcript	0	27.10	132.64	17.36	181.84	22.57	169.86	37.53
3	327697	Transcript	0	13.75	9.15	14.82	7.95	15.38	5.35	29.92
4	IG10_SR2	SilentIntergenicRegion	0	4.72	0.31	0.75	0.00	0.15	0.86	8.47
5	ER1a	ExonRegion	0	3.90	4.13	5.58	4.20	9.85	1.54	4.18
6	E1a_E2a	KnownJunction	0	28.29	9.56	20.35	12.33	5.12	4.74	24.72
7	ER2a	ExonRegion	0	10.20	12.48	14.12	14.85	15.31	8.21	17.84
8	E2a_E3a	KnownJunction	0	35.08	34.21	36.89	31.53	26.74	22.16	56.19
9	ER3a	ExonRegion	0	56.93	31.21	65.51	37.53	34.85	21.53	79.21
10	E3a_E4a	KnownJunction	0	41.86	20.47	57.67	22.38	46.41	14.45	52.48
11	I3	Intron	0	2.62	8.15	0.93	4.83	1.63	11.14	1.93
12	I3_SR1	SilentIntronRegion	0	2.50	8.12	0.87	4.70	1.57	11.22	1.97
13	I3_AR1	ActiveIntronRegion	0	5.09	9.09	2.14	7.60	2.97	9.72	1.26
14	E4_Aa	NovelBoundary	0	6.24	12.35	2.87	5.82	1.91	8.20	5.47
15	ER4a	ExonRegion	0	41.93	28.96	42.75	25.89	56.47	26.59	45.49
16	E4_Da	NovelBoundary	0	2.25	11.85	0.75	2.76	0.95	12.60	0.00
17	E4a_E5a	KnownJunction	0	54.39	20.23	37.42	21.13	46.73	16.21	53.37
18	ER5a	ExonRegion	0	46.75	25.92	46.43	34.22	42.76	19.63	47.55
19	E5_Da	NovelBoundary	1	20.08	9.98	22.63	4.20	0.00	11.07	1.66
20	E5a_E6a	KnownJunction	0	51.71	18.73	64.51	35.06	40.87	21.68	58.63
21	I5	Intron	0	1.73	9.29	0.00	5.99	0.00	11.30	0.84
22	I5_SR1	SilentIntronRegion	0	1.75	9.46	0.00	6.11	0.00	11.49	0.86
23	E6_Aa	NovelBoundary	0	1.03	8.28	0.00	10.57	0.00	10.13	0.00
24	ER6a	ExonRegion	0	60.50	25.73	62.44	36.00	56.79	21.13	81.79
25	E6_Da	NovelBoundary	0	1.84	9.90	0.00	5.31	0.99	8.90	0.87
26	E6a_E7a	KnownJunction	0	55.34	33.31	52.19	35.08	69.41	18.09	85.17
27	E7_Aa	NovelBoundary	1	1.77	3.65	0.00	4.90	1.18	14.42	1.35
28	ER7a	ExonRegion	0	36.02	27.59	34.22	32.73	47.11	12.80	65.65
29	E7_Da	NovelBoundary	1	0.85	14.11	0.00	5.72	0.00	19.81	0.00
30	E7a_E8a	KnownJunction	0	36.43	22.17	42.51	27.20	42.79	10.21	69.97
31	E8_Aa	NovelBoundary	0	2.77	7.83	6.67	7.56	0.00	8.84	1.53
32	ER8a	ExonRegion	0	53.23	32.41	49.96	30.27	67.99	19.40	78.29
33	E8_Da	NovelBoundary	0	0.00	13.61	1.32	10.57	0.00	6.59	0.57
34	E8a_E9a	KnownJunction	0	53.71	30.74	40.60	22.38	50.65	12.49	74.92
35	E8a_E10a	NovelJunction	0	4.57	2.05	6.58	11.65	0.00	3.22	1.53
36	ER9a	ExonRegion	0	48.52	26.05	37.13	24.74	58.99	12.01	76.45
37	E9_Da	NovelBoundary	0	4.01	7.67	0.59	5.74	0.00	8.98	2.29
38	E9a_E10a	KnownJunction	0	40.17	27.53	32.15	28.47	62.40	14.95	82.59
39	E10_Aa	NovelBoundary	0	6.58	12.58	0.70	2.76	0.00	6.91	0.76
40	ER10a	ExonRegion	0	36.04	27.85	39.08	29.91	47.52	18.57	65.84
41	E10a_E11a	KnownJunction	0	33.30	16.84	25.28	36.65	32.87	15.60	56.64
42	E11_Aa	NovelBoundary	0	1.67	11.30	2.05	10.29	0.00	4.07	3.41
43	ER11a	ExonRegion	0	27.08	23.34	29.25	31.73	40.42	15.44	58.54
44	E11a_E12a	KnownJunction	0	28.96	24.01	38.94	37.58	34.99	9.76	64.69
45	ER12a	ExonRegion	0	24.74	29.68	35.08	36.70	32.92	15.49	54.20
46	E12a_E13a	KnownJunction	0	35.87	31.68	45.55	48.11	40.80	17.80	92.88
47	I12	Intron	0	0.98	8.34	1.21	5.26	0.31	7.71	2.32
48	I12_SR1	SilentIntronRegion	0	0.98	8.39	1.22	5.29	0.31	7.75	2.34
49	E13_Aa	NovelBoundary	0	3.99	10.32	2.03	11.35	0.00	9.38	2.34
50	ER13a	ExonRegion	0	41.36	49.05	45.16	35.99	64.51	20.74	91.15
51	E13_Da	NovelBoundary	0	1.52	10.64	0.00	7.59	0.00	5.60	4.24
52	E13a_E14a	KnownJunction	0	34.51	30.71	53.87	47.71	52.68	14.15	91.03
53	E14_Aa	NovelBoundary	0	2.54	17.44	4.87	8.32	0.00	12.62	4.20
54	ER14a	ExonRegion	0	40.53	44.57	53.20	43.21	61.91	22.96	98.60
55	E14a_E15a	KnownJunction	0	34.48	41.14	39.19	36.17	53.21	15.01	89.10
56	E15_Aa	NovelBoundary	1	18.34	6.52	16.28	2.82	0.00	14.42	0.00
57	ER15a	ExonRegion	0	41.28	29.55	44.54	36.77	54.21	18.49	77.41
58	E15_Da	NovelBoundary	0	1.64	13.95	1.28	6.85	0.90	5.90	2.97
59	E15a_E16a	KnownJunction	0	43.23	25.22	48.01	45.65	58.88	22.40	73.51
60	I15	Intron	0	2.39	10.61	1.86	4.73	0.42	8.11	1.76
61	I15_SR1	SilentIntronRegion	0	2.39	10.63	1.86	4.74	0.42	8.13	1.77
62	E16_Aa	NovelBoundary	0	2.35	13.24	1.39	6.12	0.00	7.72	1.49
63	ER16a	ExonRegion	0	28.66	35.87	39.05	45.07	51.37	18.74	58.86
64	E16_Da	NovelBoundary	0	5.06	5.70	0.00	3.58	0.00	11.90	0.89
65	E16a_E17a	KnownJunction	0	23.80	30.32	35.91	31.32	49.70	17.66	59.43
66	I16	Intron	0	0.87	5.01	0.00	4.19	0.00	9.66	0.25
67	I16_SR1	SilentIntronRegion	0	0.88	5.07	0.00	4.24	0.00	9.79	0.26
68	ER17a	ExonRegion	0	26.98	27.94	25.92	37.82	44.23	15.51	42.49
69	E17a_E18a	KnownJunction	0	38.57	34.39	42.49	43.51	61.30	18.95	63.42
70	E18_Aa	NovelBoundary	0	1.03	13.35	1.72	3.96	2.03	8.28	3.01
71	ER18a	ExonRegion	0	43.89	31.80	56.83	42.10	60.14	21.87	76.25
72	E18_Da	NovelBoundary	0	0.00	1.58	0.00	0.00	0.00	8.90	0.00
73	E18a_E19a	KnownJunction	0	46.77	25.77	61.58	38.52	46.04	27.79	87.79
74	ER19a	ExonRegion	0	54.88	32.77	79.37	46.19	69.07	31.89	98.59
75	E19a_E20a	KnownJunction	0	60.67	46.76	84.67	43.54	81.54	27.07	99.25
76	E20_Aa	NovelBoundary	0	3.35	9.12	0.00	6.31	0.00	4.05	1.99
77	ER20a	ExonRegion	0	62.62	37.43	71.04	35.32	75.56	22.53	97.37
78	E20a_E21a	KnownJunction	0	53.06	45.19	55.58	32.27	58.49	19.11	86.52
79	ER21a	ExonRegion	0	44.22	34.37	47.56	41.10	48.42	15.32	73.07
80	E21_Da	NovelBoundary	0	2.64	10.17	0.59	4.61	2.33	2.60	0.00
81	E21a_E22a	KnownJunction	0	61.34	39.28	57.85	42.26	66.62	18.92	86.17
82	E22_Aa	NovelBoundary	0	3.30	2.52	0.00	3.01	0.00	10.45	0.00
83	ER22a	ExonRegion	0	33.93	26.60	30.91	38.00	33.92	16.73	63.53
84	E22_Da	NovelBoundary	0	3.39	9.59	1.42	3.12	0.88	11.47	2.81
85	E22a_E23a	KnownJunction	0	24.05	24.04	21.84	32.16	19.96	10.48	48.54
86	E23_Aa	NovelBoundary	0	5.54	4.49	5.20	5.66	0.00	8.90	4.50
87	ER23a	ExonRegion	0	25.48	24.75	25.99	29.31	23.04	9.62	43.55
88	E23a_E24a	KnownJunction	0	21.01	24.41	37.26	28.69	29.46	11.74	41.33
89	ER24a	ExonRegion	0	26.43	26.20	34.44	22.92	34.07	12.86	55.55
90	E24_Da	NovelBoundary	0	4.57	10.90	7.30	11.16	0.97	15.81	8.04
91	E24a_E25a	KnownJunction	0	36.42	34.55	41.52	29.42	56.62	11.15	84.07
92	I24	Intron	0	6.21	10.67	8.04	11.27	3.12	12.00	7.93
93	I24_AR1	ActiveIntronRegion	0	6.25	10.74	8.08	11.34	3.13	12.07	7.98
94	E25_Aa	NovelBoundary	0	9.40	19.55	12.07	15.23	3.09	11.10	8.89
95	ER25a	ExonRegion	0	31.30	33.63	60.67	35.17	57.35	32.75	96.19
96	E25_Da	NovelBoundary	0	0.00	9.04	1.32	9.56	0.00	14.39	5.04
97	E25a_E26a	KnownJunction	0	27.44	44.16	57.74	41.86	68.17	29.51	101.90
98	I25_SR1	SilentIntronRegion	0	1.35	8.11	0.94	2.68	0.62	8.53	2.46
99	I25_AR1	ActiveIntronRegion	0	0.00	7.53	0.07	2.49	0.81	3.19	2.70
100	E26_Aa	NovelBoundary	0	2.27	6.83	3.08	5.91	1.18	12.09	1.46
101	ER26a	ExonRegion	0	41.82	37.82	71.14	34.45	83.44	19.97	113.41
102	E26_Da	NovelBoundary	0	3.84	13.11	7.63	12.95	5.69	20.93	10.19
103	E26a_E27a	KnownJunction	0	45.61	44.24	71.89	43.64	70.61	22.00	128.50
104	E27_Aa	NovelBoundary	0	1.52	11.43	1.49	3.03	2.35	11.44	3.37
105	ER27a	ExonRegion	0	41.64	48.14	62.83	42.32	72.46	24.07	125.30
106	E27_Da	NovelBoundary	0	7.61	9.04	6.84	13.19	9.11	12.68	1.49
107	E27a_E28a	KnownJunction	0	39.44	35.12	49.85	30.37	67.96	20.26	115.51
108	I27	Intron	0	3.90	7.54	3.26	7.74	6.12	8.47	7.39
109	I27_AR1	ActiveIntronRegion	0	3.91	7.55	3.26	7.75	6.13	8.49	7.40
110	E28_Aa	NovelBoundary	0	2.65	6.17	3.61	2.71	3.50	9.78	4.34
111	ER28a	ExonRegion	0	40.62	36.56	53.18	27.62	81.95	21.27	120.58
112	E28_Da	NovelBoundary	0	1.03	5.25	2.20	6.10	1.18	8.87	2.09
113	E28a_E29a	KnownJunction	0	56.85	36.39	65.47	22.30	90.90	29.48	139.24
114	E29_Aa	NovelBoundary	1	2.30	7.25	3.48	1.44	3.48	14.98	1.73
115	ER29a	ExonRegion	0	67.12	37.59	60.54	25.29	80.46	22.29	128.74
116	E29a_E30a	KnownJunction	0	72.07	30.03	62.88	31.72	77.11	21.90	106.24
117	ER30a	ExonRegion	0	61.00	30.12	58.75	36.87	76.94	18.33	106.80
118	E30a_E31a	KnownJunction	0	50.72	23.28	54.74	32.13	62.24	18.71	102.05
119	ER31a	ExonRegion	0	57.05	31.33	56.77	50.13	108.32	22.69	122.86
120	E31_Da	NovelBoundary	0	6.63	4.57	1.54	2.84	0.00	14.85	0.83
121	E31a_E32a	KnownJunction	0	87.57	38.59	78.26	52.42	122.69	27.26	134.44
122	I31	Intron	0	2.55	8.53	0.79	6.48	0.60	9.37	1.81
123	I31_SR1	SilentIntronRegion	0	2.71	8.67	0.72	6.55	0.59	9.41	1.84
124	I31_AR1	ActiveIntronRegion	0	0.00	6.61	1.83	5.54	0.86	8.93	1.27
125	E32_Aa	NovelBoundary	0	3.30	3.91	0.60	7.78	1.01	10.13	3.53
126	ER32a	ExonRegion	0	65.82	41.00	72.04	55.96	94.82	32.48	129.82
127	E32_Da	NovelBoundary	0	2.07	7.72	0.89	7.75	0.00	11.10	0.00
128	E32a_E33a	KnownJunction	0	67.99	30.50	73.37	59.82	80.20	22.89	100.62
129	E33_Aa	NovelBoundary	0	5.24	9.01	0.00	10.35	0.00	11.93	0.56
130	ER33a	ExonRegion	0	76.71	53.02	80.78	66.89	127.64	39.13	152.80
131	E33_Da	NovelBoundary	0	3.72	8.91	2.57	6.77	1.01	17.26	0.70
132	E33a_E34a	KnownJunction	0	100.96	45.16	81.08	48.09	106.25	31.65	149.81
133	E34_Aa	NovelBoundary	1	47.80	4.70	32.84	13.25	0.00	10.00	1.49
134	ER34a	ExonRegion	0	93.58	61.35	94.04	67.20	108.59	33.75	181.63
135	E34_Da	NovelBoundary	0	2.34	15.97	1.75	5.85	2.35	15.60	1.65
136	E34a_E35a	KnownJunction	0	77.52	51.91	81.57	57.00	126.49	25.81	171.23
137	ER35a	ExonRegion	0	58.14	40.32	60.57	51.67	113.56	26.68	141.95
138	E35_Da	NovelBoundary	0	3.82	4.26	0.59	4.44	1.18	9.84	1.39
139	E35a_E36a	KnownJunction	0	43.19	42.82	61.30	34.87	108.76	35.48	122.89
140	E35a_E37a	NovelJunction	0	0.00	0.97	3.08	10.08	0.00	2.25	2.09
141	E36_Aa	NovelBoundary	1	49.70	320.41	33.15	408.51	20.19	623.15	49.03
142	ER36a	ExonRegion	0	63.18	46.56	68.73	42.23	98.93	30.38	141.00
143	E36_Da	NovelBoundary	1	38.70	197.25	17.40	356.60	24.46	431.26	35.08
144	E36a_E37a	KnownJunction	0	63.39	35.57	76.81	41.29	84.90	33.50	112.73
145	E37_Aa	NovelBoundary	1	58.48	339.93	19.67	485.55	22.68	480.28	59.73
146	ER37a	ExonRegion	0	47.11	37.07	65.21	42.75	78.08	28.40	139.33
147	E37_Da	NovelBoundary	0	65.54	341.06	32.35	451.12	21.58	545.21	46.29
148	E37a_E38a	KnownJunction	0	60.78	47.58	83.59	54.37	142.60	36.58	162.15
149	E38_Aa	NovelBoundary	0	47.03	321.93	28.41	440.91	30.18	443.94	59.69
150	ER38a	ExonRegion	0	55.51	38.35	67.83	43.02	89.28	31.11	140.07
151	E38_Da	NovelBoundary	1	53.52	348.36	22.59	515.00	31.56	544.87	72.96
152	E38a_E39a	KnownJunction	0	82.26	50.57	96.41	52.83	118.17	46.18	182.58
153	E39_Aa	NovelBoundary	1	56.46	346.52	24.77	465.94	38.75	435.36	61.34
154	ER39a	ExonRegion	0	71.44	38.57	74.04	40.93	75.19	33.15	141.33
155	E39_Da	KnownBoundary	0	55.96	243.83	48.82	335.93	35.69	330.76	94.30
156	E39a_E39b	KnownJunction	0	27.10	132.64	17.36	181.84	22.57	169.86	37.53
157	ER39b	ExonRegion	0	27.49	18.30	29.65	14.89	30.75	10.71	59.48
158	E39_Ab	KnownBoundary	0	78.09	145.20	42.02	230.08	82.69	242.89	68.66
159	ER39c	ExonRegion	0	6.13	0.92	5.31	2.63	14.61	0.60	7.96
160	E39_Db	KnownBoundary	0	47.88	231.08	34.00	292.50	25.38	382.70	68.27
161	ER39d	ExonRegion	0	0.00	0.00	0.00	1.00	0.00	0.00	0.35