Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ADAMTS9	Gene	0	304.20	180.19	509.88	155.73	1.48	124.64	10.63
2	295903	Transcript	0	278.48	180.06	483.80	146.01	1.43	107.63	9.38
3	IG50_AR74	ActiveIntergenicRegion	0	60.95	32.59	28.77	24.36	226.25	16.57	14.19
4	IG50_AR63	ActiveIntergenicRegion	0	1.24	1.60	3.38	8.86	0.00	15.39	0.13
5	IG50_SR40	SilentIntergenicRegion	0	3.41	2.42	4.11	16.25	0.00	31.45	0.00
6	IG50_AR62	ActiveIntergenicRegion	0	3.99	2.19	7.20	19.66	0.00	28.38	0.13
7	IG50_AR60	ActiveIntergenicRegion	0	2.15	0.68	4.29	5.79	0.00	9.99	0.00
8	IG50_AR59	ActiveIntergenicRegion	0	0.71	1.96	3.52	5.92	0.36	11.22	0.00
9	IG50_AR54	ActiveIntergenicRegion	0	1.02	1.17	1.53	4.80	0.00	10.43	0.00
10	IG50_SR35	SilentIntergenicRegion	0	1.38	1.13	3.50	5.75	0.06	8.02	0.03
11	IG50_AR50	ActiveIntergenicRegion	0	0.00	0.75	1.63	1.29	0.00	9.81	0.00
12	IG50_SR32	SilentIntergenicRegion	0	1.82	1.49	3.02	6.38	0.05	10.48	0.05
13	IG50_AR49	ActiveIntergenicRegion	0	4.64	1.81	5.52	20.08	0.08	17.39	0.04
14	IG50_AR48	ActiveIntergenicRegion	0	3.76	2.71	7.41	19.92	0.11	25.35	0.05
15	IG50_AR47	ActiveIntergenicRegion	0	2.72	2.58	5.78	8.81	0.09	7.67	0.00
16	IG50_SR29	SilentIntergenicRegion	0	2.59	1.47	3.79	8.45	0.04	11.16	0.21
17	IG50_AR46	ActiveIntergenicRegion	0	2.12	4.60	3.98	15.70	0.00	19.14	0.00
18	IG50_AR45	ActiveIntergenicRegion	0	4.93	0.88	4.92	7.08	0.00	16.81	0.08
19	IG50_SR27	SilentIntergenicRegion	0	3.31	1.28	4.39	9.45	0.04	7.49	0.07
20	IG50_AR44	ActiveIntergenicRegion	0	1.54	1.21	3.73	10.97	0.00	1.90	0.67
21	IG50_AR43	ActiveIntergenicRegion	0	1.09	1.21	4.28	8.90	0.00	5.22	0.14
22	IG50_AR38	ActiveIntergenicRegion	0	0.72	1.05	1.74	5.83	0.00	8.34	0.15
23	IG50_AR18	ActiveIntergenicRegion	0	12.08	34.75	19.77	114.34	0.20	173.31	0.74
24	IG50_AR16	ActiveIntergenicRegion	0	1.47	3.53	4.00	2.49	0.00	15.27	0.00
25	IG50_SR11	SilentIntergenicRegion	0	3.92	4.44	3.16	10.24	0.02	10.36	0.12
26	IG50_AR15	ActiveIntergenicRegion	0	3.09	3.25	4.27	12.06	0.00	11.05	0.00
27	IG50_AR14	ActiveIntergenicRegion	0	4.10	14.42	2.12	20.49	0.00	17.86	0.14
28	IG50_SR5	SilentIntergenicRegion	0	4.66	5.47	4.00	8.09	0.00	12.06	0.07
29	IG50_AR8	ActiveIntergenicRegion	0	3.99	4.12	3.32	6.46	0.10	9.21	0.03
30	IG50_SR4	SilentIntergenicRegion	0	3.22	5.33	3.77	10.27	0.05	12.06	0.20
31	IG50_AR7	ActiveIntergenicRegion	0	4.26	11.40	5.76	8.41	0.09	11.54	0.00
32	IG50_AR4	ActiveIntergenicRegion	0	2.92	0.00	9.99	5.86	0.00	1.35	0.00
33	IG50_AR3	ActiveIntergenicRegion	0	2.56	0.81	9.03	6.23	0.00	1.63	0.00
34	IG50_SR1	SilentIntergenicRegion	0	3.57	6.20	4.43	9.36	0.00	5.62	0.10
35	IG50_AR1	ActiveIntergenicRegion	0	20.31	25.36	23.99	13.59	0.16	8.19	0.00
36	ER1a	ExonRegion	0	67.13	101.16	130.94	84.74	0.03	39.33	2.31
37	E1a_E2a	KnownJunction	0	101.98	165.35	181.68	120.93	0.00	54.51	2.49
38	ER2a	ExonRegion	0	181.29	268.01	366.45	190.57	0.86	159.41	6.84
39	E2a_E3a	KnownJunction	0	185.02	223.62	387.94	166.64	2.14	133.09	8.23
40	E2a_E4a	NovelJunction	0	3.87	6.94	8.51	4.85	0.00	10.10	0.63
41	I2_AR1	ActiveIntronRegion	1	6.27	24.08	9.53	81.63	0.18	89.94	0.33
42	ER3a	ExonRegion	0	226.77	245.92	499.33	181.67	0.97	154.49	11.41
43	E3a_E4a	KnownJunction	0	194.10	246.85	438.77	163.66	2.17	126.84	6.71
44	ER4a	ExonRegion	0	276.36	229.98	611.40	140.69	0.75	114.47	8.83
45	E4a_E5a	KnownJunction	1	268.19	123.21	637.94	75.64	2.10	68.47	6.25
46	E4a_E6a	NovelJunction	1	38.44	61.55	19.47	19.45	0.00	20.64	0.00
47	ER5a	ExonRegion	1	310.41	115.12	690.02	88.13	2.61	70.83	6.14
48	E5a_E6a	KnownJunction	0	289.39	136.03	648.33	112.46	0.00	73.46	10.36
49	ER6a	ExonRegion	1	304.40	181.00	649.78	127.07	1.23	91.95	5.87
50	E6a_E7a	KnownJunction	1	279.64	181.75	621.40	133.23	3.53	81.85	1.56
51	ER7a	ExonRegion	1	337.46	225.40	674.49	170.77	2.27	96.41	5.45
52	E7a_E8a	KnownJunction	0	290.81	211.41	482.47	158.86	1.18	85.71	9.14
53	ER8a	ExonRegion	0	360.42	256.91	659.87	179.95	2.45	118.91	9.13
54	E8a_E9a	KnownJunction	1	384.60	267.81	741.41	209.17	0.00	129.90	5.27
55	ER9a	ExonRegion	0	308.17	234.72	591.86	175.58	1.69	113.29	12.03
56	E9a_E10a	KnownJunction	0	257.51	198.06	465.30	147.19	0.00	112.02	13.18
57	ER10a	ExonRegion	0	269.33	206.51	490.49	138.93	1.25	104.30	10.17
58	E10a_E11a	KnownJunction	0	235.31	184.48	388.34	129.60	1.13	102.27	9.90
59	ER11a	ExonRegion	0	272.07	188.37	451.80	117.43	2.68	88.06	8.38
60	E11a_E12a	KnownJunction	0	253.92	180.93	455.44	116.79	3.32	70.27	8.07
61	ER12a	ExonRegion	0	284.19	228.24	468.16	139.75	1.36	100.76	7.84
62	E12a_E13a	KnownJunction	0	330.41	220.55	507.52	138.25	2.35	91.15	6.62
63	ER13a	ExonRegion	0	338.44	269.58	522.90	157.68	1.59	100.06	9.95
64	E13a_E14a	KnownJunction	0	398.59	273.85	554.82	145.64	0.00	114.19	10.28
65	ER14a	ExonRegion	0	273.73	229.71	443.29	137.19	0.60	103.68	10.46
66	E14a_E15a	KnownJunction	0	266.94	118.67	448.28	106.03	0.00	77.85	6.38
67	E14a_E16a	NovelJunction	1	0.88	25.38	0.62	3.36	0.00	1.29	0.85
68	ER15a	ExonRegion	0	205.74	149.81	409.00	114.48	0.55	82.35	8.74
69	E15a_E16a	KnownJunction	0	177.68	174.97	394.18	131.18	1.18	61.45	8.20
70	ER16a	ExonRegion	0	268.05	191.80	553.58	140.24	0.80	74.01	9.56
71	E16a_E17a	KnownJunction	0	266.96	156.39	533.79	116.03	1.18	75.63	8.66
72	ER17a	ExonRegion	0	306.40	181.01	602.61	132.71	2.36	83.70	10.01
73	E17a_E18a	KnownJunction	0	288.57	214.56	607.09	127.65	0.00	86.30	7.80
74	ER18a	ExonRegion	0	268.66	201.34	538.25	130.55	1.16	98.19	11.59
75	E18a_E19a	KnownJunction	0	243.21	190.49	509.05	122.99	2.14	92.08	11.12
76	ER19a	ExonRegion	0	255.35	164.09	481.33	124.77	2.44	89.37	7.95
77	E19_Da	NovelBoundary	1	79.48	4.20	158.69	2.60	0.00	3.06	0.00
78	E19a_E20a	KnownJunction	0	210.83	156.66	419.37	125.59	0.88	68.04	6.89
79	E19a_E21a	NovelJunction	0	1.77	20.73	5.50	14.28	0.00	9.62	0.00
80	ER20a	ExonRegion	0	308.17	179.91	537.87	139.26	0.95	109.04	8.28
81	E20a_E21a	KnownJunction	0	294.73	176.52	546.62	144.04	0.00	125.10	9.30
82	ER21a	ExonRegion	0	348.14	255.66	597.31	163.97	0.58	149.91	9.75
83	E21a_E22a	KnownJunction	0	320.98	239.28	468.96	153.17	2.10	133.41	9.90
84	ER22a	ExonRegion	0	360.96	244.58	589.33	197.92	1.60	147.45	11.63
85	E22a_E23a	KnownJunction	0	286.68	226.85	426.34	187.69	1.04	120.12	12.07
86	ER23a	ExonRegion	0	412.85	279.23	655.15	254.76	2.76	147.99	13.54
87	E23a_E24a	KnownJunction	0	414.98	342.84	710.99	268.47	5.67	156.16	12.30
88	ER24a	ExonRegion	0	378.52	266.60	616.36	228.85	1.82	135.46	16.95
89	E24a_E25a	KnownJunction	0	296.88	241.75	474.05	205.43	1.15	137.16	15.02
90	E24a_E26a	NovelJunction	0	7.24	16.08	19.56	10.48	0.00	10.80	0.00
91	ER25a	ExonRegion	0	286.18	251.49	505.63	198.99	2.35	127.72	14.38
92	E25a_E26a	KnownJunction	0	237.86	232.03	437.66	191.67	0.00	108.16	12.41
93	ER26a	ExonRegion	0	196.13	223.01	426.06	171.79	2.08	114.20	12.78
94	E26a_E27a	KnownJunction	0	170.44	154.08	401.74	112.97	1.18	90.61	8.67
95	ER27a	ExonRegion	0	233.60	180.26	517.01	147.69	1.46	102.77	7.68
96	E27a_E28a	KnownJunction	0	264.50	193.33	571.48	165.91	1.15	144.26	9.11
97	ER28a	ExonRegion	0	348.94	239.89	685.37	198.78	1.77	163.04	11.53
98	E28_Da	NovelBoundary	0	176.61	99.60	320.86	44.56	1.18	46.82	2.88
99	E28a_E29a	KnownJunction	0	166.32	128.62	321.74	126.81	0.00	108.06	7.72
100	E28a_E30a	NovelJunction	0	19.38	8.12	27.94	10.57	0.00	9.00	0.83
101	I28_SR1	SilentIntronRegion	0	174.09	68.39	286.88	39.64	0.98	37.09	2.61
102	I28_AR1	ActiveIntronRegion	0	224.16	72.13	354.72	33.90	0.88	38.91	2.48
103	I28_SR2	SilentIntronRegion	0	84.77	18.52	151.37	12.04	0.00	12.51	1.03
104	I28_AR2	ActiveIntronRegion	0	223.04	84.55	392.37	36.80	1.49	41.54	2.42
105	I28_AR3	ActiveIntronRegion	1	192.93	73.73	316.13	36.94	0.00	41.76	0.67
106	I28_AR4	ActiveIntronRegion	1	174.33	78.27	307.05	41.33	0.00	45.71	0.00
107	I28_AR5	ActiveIntronRegion	1	140.70	73.62	258.15	45.76	0.00	46.22	0.00
108	I28_AR6	ActiveIntronRegion	0	134.13	92.38	267.29	49.06	0.60	54.78	2.02
109	I28_SR3	SilentIntronRegion	0	160.36	70.73	322.64	32.86	0.66	55.49	1.63
110	ER29a	ExonRegion	0	174.73	128.73	304.92	136.33	1.45	96.83	9.06
111	E29a_E30a	KnownJunction	0	119.47	109.32	200.48	119.69	0.00	85.28	4.47
112	ER30a	ExonRegion	0	214.48	131.13	297.34	135.16	1.14	84.02	9.69
113	E30a_E31a	KnownJunction	0	267.19	140.26	297.60	139.52	0.92	100.18	8.01
114	ER31a	ExonRegion	0	399.77	164.71	432.94	164.99	1.93	133.17	11.11
115	E31a_E32a	KnownJunction	0	300.95	132.17	356.79	126.54	2.35	149.94	9.47
116	ER32a	ExonRegion	0	281.25	118.26	361.37	123.94	0.69	98.93	8.60
117	E32a_E33a	KnownJunction	1	155.38	101.20	272.29	104.27	1.82	99.94	11.68
118	ER33a	ExonRegion	0	269.54	130.36	500.43	145.45	2.44	120.80	10.35
119	E33a_E34a	KnownJunction	0	225.25	149.64	390.93	142.44	0.00	165.35	11.22
120	ER34a	ExonRegion	0	290.99	142.79	550.34	129.47	1.27	130.52	12.65
121	E34a_E35a	KnownJunction	0	424.02	149.69	769.75	133.88	4.38	124.46	10.18
122	ER35a	ExonRegion	0	218.20	101.55	415.41	112.71	1.62	95.86	7.76
123	E35a_E36a	KnownJunction	0	151.98	98.47	316.08	100.70	1.75	96.24	8.14
124	ER36a	ExonRegion	0	177.29	87.59	301.22	100.57	0.70	93.21	6.99
125	E36a_E37a	KnownJunction	0	176.30	66.49	295.11	95.01	0.00	88.44	7.80
126	ER37a	ExonRegion	0	246.93	86.86	332.14	118.42	0.90	104.45	9.46
127	E37a_E38a	KnownJunction	0	317.58	84.80	349.50	134.64	0.00	84.20	6.84
128	ER38a	ExonRegion	0	390.29	98.69	478.76	147.90	2.44	119.25	9.66
129	E38a_E39a	KnownJunction	0	476.51	96.99	513.60	148.35	4.03	110.92	9.86
130	I38_AR1	ActiveIntronRegion	0	88.09	6.59	80.83	4.09	0.00	7.44	0.84
131	E39_Aa	NovelBoundary	1	121.95	21.07	63.40	14.28	0.00	17.31	6.54
132	ER39a	ExonRegion	0	525.05	127.23	583.55	180.23	3.32	122.73	16.24
133	E39a_E40a	KnownJunction	0	418.18	107.37	557.37	150.52	0.00	119.02	14.53
134	ER40a	ExonRegion	0	413.62	119.86	593.77	165.46	1.52	169.58	14.25