Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CACNA1D	Gene	0	3.63	0.72	1.68	0.72	2.27	3.05	0.15
2	350061	Transcript	0	0.89	0.37	0.38	0.22	1.95	0.00	0.00
3	288139	Transcript	0	0.33	0.00	0.51	0.00	0.40	2.59	0.18
4	ER1a	ExonRegion	0	0.61	0.00	0.56	0.51	1.33	2.54	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	5.53	10.77	0.00
6	ER2a	ExonRegion	0	1.71	0.00	1.55	0.37	2.12	4.48	0.00
7	E2a_E3a	KnownJunction	0	3.04	0.00	1.77	1.30	0.88	0.00	0.00
8	ER3a	ExonRegion	0	3.12	0.00	2.47	1.59	1.93	3.53	0.00
9	E3a_E4a	KnownJunction	0	2.35	0.00	0.66	0.00	3.43	7.53	0.00
10	ER4a	ExonRegion	0	4.98	0.00	1.60	0.00	3.69	5.01	0.00
11	E4a_E5a	KnownJunction	0	3.50	0.00	2.34	0.00	3.25	1.66	0.00
12	ER5a	ExonRegion	0	5.29	0.00	0.56	0.10	2.18	0.95	0.00
13	E5a_E6a	KnownJunction	0	2.34	0.00	1.57	1.14	2.35	0.00	0.00
14	ER6a	ExonRegion	0	3.41	0.02	1.42	1.15	3.86	0.46	0.00
15	E6a_E7a	KnownJunction	0	2.32	0.00	1.78	0.00	5.14	1.34	0.00
16	ER7a	ExonRegion	0	1.78	0.45	0.70	0.49	2.64	2.30	0.00
17	E7a_E8a	KnownJunction	0	0.72	1.47	0.00	0.00	3.11	0.00	0.00
18	E7a_E9a	KnownJunction	0	0.77	0.00	1.98	0.00	0.00	4.61	0.00
19	ER8a	ExonRegion	0	1.00	0.00	0.00	0.90	1.59	0.00	0.00
20	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER9a	ExonRegion	0	1.23	0.00	1.07	0.00	2.38	6.11	0.00
22	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.84	0.00
23	ER10a	ExonRegion	0	1.01	0.00	0.58	0.00	0.44	3.39	0.00
24	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	3.22	0.00
25	ER11a	ExonRegion	0	1.57	0.00	0.35	0.00	2.30	2.05	0.39
26	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.50	0.80
27	E11a_E13a	KnownJunction	0	1.82	0.00	1.54	0.00	3.11	0.00	0.00
28	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.51	0.28
29	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER13a	ExonRegion	0	1.34	0.00	1.35	0.00	1.80	0.00	0.00
31	ER14a	ExonRegion	0	3.89	0.00	0.82	0.00	1.07	0.72	0.33
32	E14a_E15a	KnownJunction	0	2.77	0.00	1.47	0.00	2.86	1.31	0.00
33	ER15a	ExonRegion	0	5.09	0.41	1.20	3.32	1.75	3.62	0.67
34	E15a_E16a	KnownJunction	0	2.90	0.00	3.20	1.00	1.75	4.13	0.00
35	ER16a	ExonRegion	0	2.57	0.00	0.86	0.95	0.99	2.16	0.00
36	E16a_E17a	KnownJunction	0	2.65	0.00	0.00	0.00	0.99	3.38	0.00
37	ER17a	ExonRegion	0	2.33	0.00	0.41	0.00	1.45	2.34	0.00
38	E17a_E18a	KnownJunction	0	2.39	0.00	0.00	0.00	0.00	3.46	0.00
39	ER18a	ExonRegion	0	1.94	0.00	0.91	0.00	0.46	1.71	0.00
40	E18a_E19a	KnownJunction	0	2.05	0.00	1.58	0.00	1.04	0.00	0.00
41	ER19a	ExonRegion	0	3.61	0.99	0.46	0.00	1.58	0.00	0.18
42	E19a_E20a	KnownJunction	0	4.36	1.37	0.00	0.00	0.00	0.00	0.72
43	ER20a	ExonRegion	0	2.48	1.60	1.11	0.00	0.00	0.04	0.57
44	E20a_E21a	KnownJunction	0	1.67	1.00	0.69	0.00	0.00	0.00	0.00
45	ER21a	ExonRegion	0	3.08	1.93	0.34	0.00	0.46	1.58	0.00
46	E21a_E22a	KnownJunction	0	1.80	0.00	1.97	0.00	1.13	1.66	0.00
47	ER22a	ExonRegion	0	1.98	2.13	1.92	0.00	0.75	0.33	0.00
48	E22a_E23a	KnownJunction	0	4.37	0.00	2.01	0.00	0.00	0.00	0.00
49	ER23a	ExonRegion	0	3.28	0.00	3.51	0.00	1.44	0.27	0.00
50	E23a_E24a	KnownJunction	0	2.82	0.00	3.94	0.00	5.30	1.18	0.00
51	ER24a	ExonRegion	0	3.89	0.00	1.76	0.00	2.66	3.04	0.11
52	E24a_E25a	KnownJunction	0	4.17	0.00	1.65	0.00	0.00	4.98	0.70
53	ER25a	ExonRegion	0	2.47	0.00	2.32	0.00	2.04	3.83	0.44
54	E25a_E26a	KnownJunction	0	2.32	0.00	0.55	0.00	4.29	5.76	0.00
55	ER26a	ExonRegion	0	1.84	1.48	0.68	0.00	3.88	5.01	0.08
56	E26a_E27a	KnownJunction	0	0.00	2.57	0.70	0.00	5.86	3.16	0.00
57	ER27a	ExonRegion	0	0.00	4.86	0.23	0.00	2.34	3.38	1.09
58	E27a_E28a	KnownJunction	0	0.88	2.31	0.00	0.00	1.18	3.27	1.48
59	ER28a	ExonRegion	0	0.79	4.59	1.17	0.00	2.32	1.10	0.39
60	E28a_E29a	KnownJunction	0	0.83	2.84	0.00	0.00	0.99	1.37	0.89
61	ER29a	ExonRegion	0	4.56	1.51	2.71	0.47	3.37	2.84	0.40
62	E29a_E30a	KnownJunction	0	9.18	1.16	3.35	0.00	6.22	3.27	0.00
63	ER30a	ExonRegion	0	8.61	0.64	2.82	1.19	3.99	2.48	0.00
64	E30a_E31a	KnownJunction	0	5.64	1.37	1.34	0.00	3.53	3.32	0.00
65	ER31a	ExonRegion	0	6.13	0.60	1.43	0.00	3.07	3.15	0.46
66	E31a_E32a	KnownJunction	0	6.23	0.00	0.00	0.00	0.00	3.32	0.00
67	ER32a	ExonRegion	0	3.21	0.00	2.34	0.00	2.45	1.21	0.00
68	E32a_E33a	KnownJunction	0	0.00	0.00	1.34	0.00	0.00	0.00	0.00
69	ER33a	ExonRegion	0	0.00	0.00	0.47	0.00	0.00	0.00	0.00
70	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER34a	ExonRegion	0	1.65	0.00	0.40	0.00	0.87	0.72	0.01
72	E34a_E35a	KnownJunction	0	1.94	0.00	0.00	0.00	2.12	0.00	0.00
73	ER35a	ExonRegion	0	2.90	0.00	0.28	0.00	1.13	0.00	0.67
74	E35a_E36a	KnownJunction	0	5.72	0.00	0.83	0.00	2.05	0.00	0.56
75	ER36a	ExonRegion	0	3.43	0.00	0.92	0.00	1.82	0.56	0.06
76	E36a_E37a	KnownJunction	0	2.82	0.00	0.00	0.00	1.08	1.66	0.00
77	ER37a	ExonRegion	0	3.31	0.00	1.70	0.00	1.98	1.91	0.32
78	E37a_E38a	KnownJunction	0	4.79	0.00	5.75	0.00	2.17	4.82	0.00
79	ER38a	ExonRegion	0	5.04	0.09	4.78	1.65	2.68	2.19	0.40
80	E38a_E39a	KnownJunction	0	5.31	1.08	5.66	1.38	2.97	4.56	0.00
81	ER39a	ExonRegion	0	5.25	2.37	4.63	0.72	2.64	2.68	0.53
82	E39a_E40a	KnownJunction	0	4.16	1.58	1.44	0.00	3.30	3.81	0.00
83	ER40a	ExonRegion	0	3.50	1.24	1.47	0.00	3.28	2.19	0.00
84	E40a_E41a	KnownJunction	0	3.69	0.00	2.96	0.00	4.36	0.00	0.00
85	ER41a	ExonRegion	0	5.31	0.91	1.75	0.00	3.44	2.78	0.00
86	E41a_E42a	KnownJunction	0	0.85	0.00	1.84	0.00	2.05	1.05	0.00
87	ER42a	ExonRegion	0	2.18	1.34	2.55	0.34	3.30	3.14	0.01
88	E42a_E43a	KnownJunction	0	1.77	1.02	0.60	1.68	2.35	4.42	0.00
89	E43_Aa	NovelBoundary	0	3.49	3.05	9.08	1.65	2.12	0.00	0.00
90	ER43a	ExonRegion	0	4.58	0.87	2.98	2.83	3.57	3.87	0.43
91	E43a_E44a	KnownJunction	0	5.42	0.00	0.72	0.00	4.31	1.61	0.00
92	ER44a	ExonRegion	0	7.00	1.49	2.97	0.52	2.44	3.93	0.14
93	E44a_E45a	KnownJunction	0	0.63	0.00	0.00	0.00	0.00	0.00	0.00
94	E45a_E46a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	ER45a	ExonRegion	0	0.20	0.00	0.00	0.00	0.06	0.00	0.00
96	ER46a	ExonRegion	0	2.96	2.14	1.40	0.63	1.94	5.44	0.00
97	E46a_E47a	KnownJunction	0	8.08	2.68	4.83	0.00	1.04	8.71	0.00
98	ER47a	ExonRegion	0	3.71	1.99	1.42	0.00	2.53	7.06	0.00
99	E47a_E48a	KnownJunction	0	3.10	0.00	0.52	0.00	2.79	2.71	0.00
100	ER48a	ExonRegion	0	5.49	0.00	1.30	3.04	2.08	4.88	0.00
101	E48a_E49a	KnownJunction	0	3.55	0.00	1.32	0.00	4.36	2.44	0.00
102	ER49a	ExonRegion	0	5.04	0.58	1.63	1.48	1.67	6.99	0.16
103	E49a_E50a	KnownJunction	0	4.22	0.00	0.89	0.00	0.90	2.71	0.00
104	ER50a	ExonRegion	0	5.13	0.78	2.91	1.84	3.64	4.23	0.19
105	IG40	Intergenic	0	44.06	15.36	48.58	31.03	48.87	9.59	0.54
106	IG40_AR1	ActiveIntergenicRegion	0	33.09	11.02	34.49	21.22	49.40	7.62	0.17
107	IG40_SR1	SilentIntergenicRegion	0	32.72	9.67	37.42	23.30	51.67	5.68	0.21
108	IG40_AR2	ActiveIntergenicRegion	0	45.73	17.26	50.24	28.73	56.09	6.62	0.68
109	IG40_SR2	SilentIntergenicRegion	0	32.73	17.22	44.86	37.27	40.46	8.33	0.80
110	IG40_AR3	ActiveIntergenicRegion	0	15.89	5.80	22.05	12.05	10.27	12.63	0.04
111	IG40_AR4	ActiveIntergenicRegion	0	76.91	25.14	84.52	53.87	52.20	16.08	1.26