Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NEK4	Gene	0	69.27	37.68	65.52	44.85	123.48	51.71	48.07
2	383721	Transcript	1	12.52	4.91	12.57	9.28	31.06	16.80	11.53
3	233027	Transcript	0	47.39	28.14	47.30	25.49	83.51	45.60	33.13
4	ER1a	ExonRegion	0	5.02	12.74	5.53	13.59	12.02	13.94	7.39
5	E1a_E2a	KnownJunction	0	14.90	34.91	24.36	43.59	68.72	19.30	27.03
6	ER2a	ExonRegion	0	46.09	59.08	60.04	65.78	110.84	66.13	60.17
7	E2a_E3a	KnownJunction	0	99.92	61.08	117.89	92.90	233.80	93.91	109.78
8	ER3a	ExonRegion	0	104.89	79.11	123.52	78.05	199.25	84.53	91.14
9	E3a_E4a	KnownJunction	0	86.32	67.89	112.30	65.53	241.66	73.19	86.03
10	ER4a	ExonRegion	0	113.47	63.13	103.29	85.60	179.63	80.23	76.16
11	E4a_E5a	KnownJunction	0	123.10	40.67	87.79	79.86	161.16	85.30	48.60
12	ER5a	ExonRegion	0	183.67	51.11	142.93	87.23	274.84	84.02	71.87
13	E5a_E6a	KnownJunction	1	182.15	56.06	123.80	97.50	135.34	110.50	55.38
14	ER6a	ExonRegion	0	169.43	40.76	139.95	70.28	262.97	72.01	63.49
15	E6a_E7a	KnownJunction	0	77.32	26.03	56.33	43.73	115.91	41.11	27.93
16	ER7a	ExonRegion	0	88.04	57.18	95.27	66.76	179.04	79.18	82.88
17	E7a_E8a	KnownJunction	0	40.62	42.69	51.55	28.04	84.24	41.03	45.22
18	E7a_E9a	KnownJunction	1	22.55	8.75	24.44	18.53	52.84	32.37	22.33
19	E8_Aa	NovelBoundary	0	40.41	44.24	58.73	42.45	53.32	36.10	31.79
20	ER8a	ExonRegion	0	40.56	32.25	47.45	25.62	74.95	35.38	31.26
21	E8a_E9a	KnownJunction	0	33.05	30.84	44.65	22.95	43.69	48.75	34.22
22	ER9a	ExonRegion	0	69.88	43.91	78.39	43.07	146.05	59.78	57.02
23	E9a_E10a	KnownJunction	0	61.74	44.50	62.83	44.67	131.91	47.86	48.15
24	ER10a	ExonRegion	0	74.67	53.36	69.43	50.89	126.53	52.49	54.28
25	E10a_E11a	KnownJunction	0	44.30	55.77	54.56	46.68	131.65	39.58	46.00
26	E11_Aa	NovelBoundary	1	14.60	0.00	20.49	0.00	1.13	0.00	1.62
27	ER11a	ExonRegion	0	46.58	45.66	50.35	36.03	120.90	46.62	48.41
28	E11a_E12a	KnownJunction	0	55.76	36.28	55.87	40.47	124.51	49.66	56.41
29	ER12a	ExonRegion	0	44.84	32.98	41.11	41.84	124.70	32.53	53.38
30	E12a_E13a	KnownJunction	0	27.40	31.32	29.06	23.65	92.72	24.47	39.86
31	ER13a	ExonRegion	0	36.26	32.87	37.60	34.20	104.33	38.47	48.99
32	E13a_E14a	KnownJunction	0	47.17	25.30	36.16	40.75	108.90	47.38	51.85
33	ER14a	ExonRegion	0	57.23	48.36	54.55	58.80	126.94	45.57	49.61
34	E14a_E15a	KnownJunction	0	56.76	40.72	53.99	55.32	109.02	55.61	38.47
35	ER15a	ExonRegion	0	71.54	42.64	56.96	45.02	132.47	56.55	34.82
36	E15_Da	KnownBoundary	0	3.86	1.63	1.37	1.27	15.40	1.45	3.50
37	E15a_E16a	KnownJunction	1	63.86	18.71	44.99	27.61	131.72	64.24	25.52
38	ER15b	ExonRegion	0	2.49	1.07	0.70	0.02	9.29	1.23	0.73
39	ER16a	ExonRegion	0	58.87	16.22	47.84	23.23	82.97	38.63	29.41
40	IG25	Intergenic	0	7.67	5.81	9.49	6.57	18.99	9.64	8.29
41	IG25_AR5	ActiveIntergenicRegion	0	2.92	0.00	0.41	1.00	10.37	0.00	2.16
42	IG25_AR4	ActiveIntergenicRegion	0	6.28	6.07	9.60	4.99	22.54	3.68	19.34
43	IG25_SR4	SilentIntergenicRegion	0	13.16	11.10	14.56	9.53	31.71	13.00	13.15
44	IG25_SR3	SilentIntergenicRegion	0	4.54	0.86	4.82	2.89	12.58	3.95	4.66
45	IG25_AR2	ActiveIntergenicRegion	0	6.71	4.58	9.20	7.56	17.26	12.35	7.91