Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PCBP4	Gene	0	38.53	126.48	45.31	146.54	47.08	41.32	122.02
2	294192	Transcript	0	36.08	94.52	32.99	118.67	17.83	24.00	115.65
3	337024	Transcript	0	4.46	15.15	6.05	19.12	7.94	5.07	18.39
4	355852	Transcript	0	0	0	0	0	0	0	0
5	322099	Transcript	0	0.57	5.95	1.79	11.25	4.36	4.93	3.83
6	337016	Transcript	0	0	0	0	0	0	0	0
7	404211	Transcript	0	0	0	0	0	0	0	0
8	395013	Transcript	0	0	0	0	0	0	0	0
9	395014	Transcript	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	0	6.45	15.95	2.50	34.07	5.00	5.29	13.67
11	E1a_E3b	KnownJunction	1	2.99	10.17	0.73	10.08	6.71	6.24	14.69
12	I1_SR3	SilentIntronRegion	0	16.55	17.99	10.65	11.69	2.11	4.69	3.31
13	ER2a	ExonRegion	0	0.15	5.84	1.84	10.10	4.43	3.23	2.84
14	E2a_E3b	KnownJunction	0	0.78	9.59	2.85	18.67	5.42	10.32	4.60
15	ER3a	ExonRegion	0	5.09	13.21	3.04	9.16	1.65	2.51	1.77
16	E3_Ab	KnownBoundary	0	3.20	11.09	1.78	2.36	3.18	1.34	1.85
17	ER3b	ExonRegion	0	30.98	105.57	33.55	142.88	44.78	37.28	96.27
18	E3a_E4a	KnownJunction	0	38.67	148.12	51.63	198.82	47.81	50.81	142.25
19	E4a_E5a	KnownJunction	0	44.66	86.83	48.89	118.01	57.68	30.52	115.32
20	ER4a	ExonRegion	0	63.88	200.20	81.99	258.17	65.90	72.84	211.26
21	ER5a	ExonRegion	0	68.30	218.90	84.69	262.28	80.30	86.71	213.15
22	E5_Da	KnownBoundary	0	6.79	11.51	2.80	9.81	5.39	5.95	0.56
23	E5a_E5c	KnownJunction	0	46.93	190.91	68.09	222.26	80.11	84.82	177.87
24	ER5b	ExonRegion	0	7.66	11.48	2.53	9.33	3.03	3.95	2.85
25	E5_Ab	KnownBoundary	0	5.11	5.91	1.57	6.53	2.12	0.99	3.05
26	ER5c	ExonRegion	0	7.86	20.86	6.30	14.44	4.50	2.93	11.67
27	E5_Ac	KnownBoundary	1	24.57	13.53	33.53	6.91	3.11	0.00	4.47
28	ER5d	ExonRegion	0	72.88	279.72	98.03	309.66	102.43	101.27	275.11
29	E5b_E6a	KnownJunction	0	92.90	332.68	143.07	354.51	155.26	115.19	349.41
30	ER6a	ExonRegion	0	93.70	316.39	117.28	305.63	136.34	103.17	372.70
31	E6_Da	KnownBoundary	0	7.33	12.22	4.27	0.00	3.92	4.42	6.11
32	E6a_E6b	KnownJunction	0	69.96	236.81	77.05	202.15	110.72	41.49	299.74
33	E6a_E7a	NovelJunction	0	6.71	57.43	7.95	122.34	4.52	54.91	10.53
34	E6a_E8a	NovelJunction	1	0.00	0.00	0.70	11.68	1.18	0.00	0.00
35	ER6b	ExonRegion	0	9.88	16.53	4.46	7.52	3.11	4.57	4.09
36	E6_Ab	KnownBoundary	0	10.00	26.19	6.51	15.47	0.00	1.66	2.98
37	ER6c	ExonRegion	0	88.54	267.62	106.46	231.93	129.80	66.52	360.12
38	E6b_E7a	KnownJunction	0	88.89	225.36	94.44	226.13	128.45	53.44	358.36
39	ER7a	ExonRegion	0	52.30	228.93	79.00	228.73	77.02	55.42	212.03
40	E7a_E8a	KnownJunction	0	52.39	210.38	101.05	227.35	64.41	59.20	202.59
41	ER8a	ExonRegion	0	58.46	221.95	98.29	270.65	82.36	70.99	248.60
42	E8_Da	NovelBoundary	0	25.64	84.91	35.45	108.34	35.43	33.47	86.81
43	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E8b_E9b	KnownJunction	0	56.53	194.51	82.54	271.75	98.48	65.74	262.21
45	ER8b	ExonRegion	0	60.25	213.57	90.36	291.04	112.25	76.01	274.96
46	ER9a	ExonRegion	0	13.37	45.44	18.15	57.36	23.81	15.20	55.18
47	ER9b	ExonRegion	0	62.04	211.94	85.49	268.31	112.83	61.01	243.97
48	E9a_E10a	KnownJunction	0	58.73	172.18	71.08	213.40	84.79	42.58	175.52
49	ER10a	ExonRegion	0	60.14	171.20	87.19	259.93	100.85	62.36	202.28
50	E10a_E11a	KnownJunction	0	58.13	151.80	105.77	278.96	86.56	78.63	202.62
51	ER11a	ExonRegion	0	51.02	189.20	79.87	254.45	72.31	60.26	196.77
52	E11a_E12a	KnownJunction	0	29.46	184.45	44.03	187.50	51.87	54.94	142.97
53	ER12a	ExonRegion	0	48.01	165.11	61.17	182.69	54.92	48.66	126.85
54	E12_Da	KnownBoundary	0	37.80	52.28	42.09	76.80	21.00	12.73	43.62
55	E12a_E12b	KnownJunction	0	36.12	75.71	31.41	68.87	0.00	14.71	77.65
56	E12_Ab	KnownBoundary	0	25.65	77.50	23.94	80.57	30.96	26.21	70.90
57	ER12b	ExonRegion	0	62.55	142.87	57.04	157.62	54.26	44.14	123.32
58	ER12c	ExonRegion	0	53.03	151.43	45.70	173.87	63.90	49.18	155.38
59	E12_Db	KnownBoundary	1	15.10	53.30	9.14	74.04	13.30	18.57	54.42
60	E12b_E12c	KnownJunction	0	36.03	113.33	34.58	168.48	35.66	33.29	153.66
61	E12_Ac	KnownBoundary	0	12.80	50.10	16.47	78.35	19.06	12.14	44.41
62	ER12d	ExonRegion	0	43.03	143.35	37.93	194.53	50.62	41.07	159.20
63	ER12e	ExonRegion	0	43.44	141.96	41.65	191.59	34.45	44.53	139.18
64	E12_Dc	KnownBoundary	0	41.89	129.10	40.50	179.80	9.27	46.52	110.78
65	ER12f	ExonRegion	0	74.86	200.12	74.34	233.77	57.28	68.90	152.99
66	E12_Dd	KnownBoundary	0	90.53	175.26	76.36	224.91	93.29	68.90	142.04
67	E12d_E12d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	ER12g	ExonRegion	0	47.47	152.74	46.92	196.88	43.58	57.41	115.25
69	E12_Ad	KnownBoundary	0	9.86	66.86	5.37	68.24	7.65	22.40	22.64
70	ER12h	ExonRegion	0	13.32	49.43	17.43	50.79	15.98	14.65	29.25
71	ER12i	ExonRegion	0	10.54	23.86	16.74	21.73	20.82	3.68	27.95
72	ER12j	ExonRegion	0	1.54	6.07	4.06	6.23	4.86	1.23	5.40
73	ER12k	ExonRegion	0	0.77	2.43	0.68	4.99	3.24	1.23	4.05