Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GLT8D1	Gene	0	82.77	37.83	83.43	42.55	177.34	49.52	147.46
2	344383	Transcript	1	3.77	4.62	1.71	4.17	13.90	1.34	17.07
3	266014	Transcript	0	0	0	0	0	0	0	0
4	344678	Transcript	0	48.06	16.86	33.15	18.26	52.05	21.47	66.37
5	394786	Transcript	0	32.23	19.69	42.88	24.32	105.06	37.00	75.72
6	407584	Transcript	0	0	0	0	0	0	0	0
7	394783	Transcript	0	0.90	0.00	1.19	0.90	4.11	1.24	5.58
8	ER1a	ExonRegion	0	0.84	0.91	0.87	0.78	1.24	2.34	2.12
9	E1_Ab	KnownBoundary	0	2.27	1.42	0.88	0.00	1.01	0.00	2.41
10	E1_Ac	KnownBoundary	0	0.00	1.60	2.27	5.58	0.90	0.00	2.22
11	ER1b	ExonRegion	0	2.31	1.21	1.69	6.23	4.86	0.00	6.41
12	ER1c	ExonRegion	0	4.92	1.35	3.16	6.04	26.24	1.70	12.46
13	E1_Da	KnownBoundary	0	4.42	3.86	5.19	5.55	34.58	4.40	19.96
14	E1a_E2a	KnownJunction	0	0.90	0.00	0.00	0.00	0.00	0.00	0.00
15	E1a_E4a	NovelJunction	0	4.34	2.52	5.68	0.00	18.05	3.32	9.03
16	ER1d	ExonRegion	0	12.83	13.57	16.17	11.97	36.28	13.14	40.24
17	E1b_E2a	KnownJunction	1	3.77	4.62	1.71	4.17	13.90	1.34	17.07
18	E1b_E4a	KnownJunction	0	19.14	11.43	24.00	14.47	72.36	17.02	22.33
19	ER2a	ExonRegion	0	15.02	6.35	15.80	14.44	34.99	13.14	33.15
20	E2a_E4a	KnownJunction	0	22.88	2.52	14.59	4.28	57.19	5.95	25.72
21	ER3a	ExonRegion	0	1.06	0.00	1.67	1.80	2.97	1.13	4.79
22	E3a_E4a	KnownJunction	0	0.73	0.00	0.72	0.00	5.26	1.34	6.36
23	ER4a	ExonRegion	0	79.52	25.79	83.28	26.21	204.78	40.93	115.49
24	E4a_E5a	KnownJunction	0	112.24	33.13	109.88	33.65	280.21	47.44	150.39
25	E5_Aa	NovelBoundary	1	10.10	4.33	3.97	11.81	1.04	1.13	3.50
26	ER5a	ExonRegion	0	148.93	43.91	115.31	40.33	233.66	65.76	205.56
27	E5_Da	NovelBoundary	1	1.77	7.64	2.51	15.04	0.00	1.53	1.45
28	E5a_E6a	KnownJunction	0	158.80	46.71	145.87	43.43	256.28	76.97	220.65
29	E6_Aa	NovelBoundary	0	4.96	5.36	8.84	12.06	0.00	7.96	3.81
30	ER6a	ExonRegion	0	157.92	55.19	130.01	40.36	253.87	64.47	212.00
31	E6_Da	KnownBoundary	0	137.39	49.97	80.86	38.85	272.78	60.78	162.98
32	E6a_E6b	KnownJunction	0	75.81	27.51	41.50	21.05	90.85	48.45	90.56
33	E6b_E6c	KnownJunction	1	77.04	21.91	37.28	19.13	46.98	18.06	90.14
34	ER6b	ExonRegion	0	169.31	52.24	97.09	37.41	264.55	64.16	196.98
35	ER6c	ExonRegion	0	155.49	45.98	92.70	40.96	268.10	65.35	188.75
36	E6c_E6d	KnownJunction	0	44.86	11.90	39.42	18.18	0.00	16.40	72.75
37	ER6d	ExonRegion	0	141.39	40.90	91.22	39.07	291.55	62.53	182.14
38	E6_Ad	KnownBoundary	0	119.50	30.29	102.20	35.16	301.02	45.10	184.46
39	ER6e	ExonRegion	0	138.29	36.91	99.34	40.33	283.17	55.41	188.55
40	ER6f	ExonRegion	0	141.39	42.76	112.04	41.40	276.97	48.55	214.12
41	ER6g	ExonRegion	0	110.68	42.40	102.91	37.70	219.26	44.77	207.05
42	E6_Dd	NovelBoundary	0	10.80	10.61	9.24	9.62	2.12	10.24	5.00
43	E6d_E7a	KnownJunction	0	78.31	41.19	81.12	31.21	151.78	39.42	179.59
44	I6_AR3	ActiveIntronRegion	0	8.30	5.52	8.90	10.11	1.70	6.37	2.62
45	ER7a	ExonRegion	0	74.93	32.74	95.34	29.00	176.56	45.80	174.43
46	E7a_E8a	KnownJunction	0	96.35	25.72	115.15	28.01	237.12	34.63	198.58
47	E7a_E9a	NovelJunction	1	8.70	9.46	13.32	3.93	9.47	15.49	16.84
48	ER8a	ExonRegion	0	82.25	31.14	107.56	27.13	222.99	35.57	209.68
49	E8_Da	NovelBoundary	0	10.38	3.02	14.04	12.79	2.05	9.59	4.36
50	E8a_E9a	KnownJunction	0	72.42	39.72	113.21	24.57	227.42	42.77	186.15
51	I8	Intron	0	10.28	9.53	13.93	15.19	15.94	10.54	10.58
52	I8_AR1	ActiveIntronRegion	0	11.75	11.36	15.66	17.97	18.85	11.86	12.53
53	E9_Aa	NovelBoundary	0	22.87	30.74	23.01	32.40	19.25	41.19	19.18
54	ER9a	ExonRegion	0	114.28	65.62	135.57	72.26	244.22	63.20	228.45
55	E9_Da	NovelBoundary	0	48.50	80.99	52.35	76.45	77.92	47.81	59.29
56	E9a_E10a	KnownJunction	0	135.17	43.61	127.84	40.99	324.75	45.75	206.52
57	I9	Intron	0	31.63	29.79	42.89	36.47	47.60	36.65	37.06
58	I9_AR1	ActiveIntronRegion	0	31.79	29.94	43.13	36.67	47.85	36.83	37.27
59	E10_Aa	NovelBoundary	0	49.77	36.39	53.56	55.16	54.61	49.02	35.70
60	ER10a	ExonRegion	0	230.35	73.38	209.69	85.54	419.13	95.06	282.34
61	E10_Da	NovelBoundary	0	78.21	43.79	70.50	67.00	105.95	36.82	50.02
62	E10a_E11a	KnownJunction	0	198.98	46.26	142.04	35.87	417.76	81.36	238.49
63	I10	Intron	1	34.02	20.16	34.62	37.53	43.64	18.85	19.01
64	I10_AR1	ActiveIntronRegion	1	34.56	20.45	35.15	38.04	44.29	19.12	19.30
65	E11_Aa	NovelBoundary	1	43.06	34.49	58.00	66.97	79.83	29.83	45.00
66	ER11a	ExonRegion	0	198.97	65.86	161.73	68.54	431.86	83.16	321.45
67	E11_Da	NovelBoundary	0	138.89	43.98	127.94	60.79	278.34	74.56	265.48
68	E11a_E11b	KnownJunction	0	90.63	39.85	80.72	51.23	174.46	45.91	144.76
69	E11b_E11c	KnownJunction	1	10.70	1.58	19.41	4.80	46.57	14.36	33.46
70	E11_Dc	NovelBoundary	1	14.55	23.96	24.56	45.78	42.30	22.11	22.59
71	E11c_E12a	KnownJunction	1	92.93	28.16	72.77	23.76	288.41	57.00	136.13
72	E11d_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER11b	ExonRegion	0	170.59	58.72	160.99	64.01	352.02	91.95	313.46
74	ER11c	ExonRegion	0	166.24	50.21	153.69	64.84	365.42	88.54	300.94
75	ER11d	ExonRegion	0	158.04	47.38	139.09	59.44	373.07	88.27	283.33
76	ER11e	ExonRegion	0	129.87	43.37	116.92	45.89	333.58	79.57	239.21
77	ER11f	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	I11	Intron	0	21.00	28.84	34.26	38.38	50.87	30.96	31.02
79	I11_AR1	ActiveIntronRegion	0	21.24	29.18	34.63	38.85	51.51	31.35	31.38
80	E12_Aa	NovelBoundary	0	32.30	28.29	42.02	57.00	73.22	48.08	41.29
81	E12_Ab	NovelBoundary	0	88.07	42.17	80.04	61.28	324.91	74.56	130.00
82	ER12a	ExonRegion	0	122.09	45.15	108.13	44.42	348.10	81.68	210.64
83	E12_Db	KnownBoundary	0	17.76	15.11	17.30	12.87	92.65	10.80	30.98
84	E12b_E12c	KnownJunction	0	86.00	57.51	109.23	68.16	268.61	96.64	193.69
85	ER12b	ExonRegion	0	127.94	53.45	110.75	53.00	370.10	91.34	211.15
86	E12_Ac	KnownBoundary	1	22.25	22.36	45.12	32.16	157.36	49.34	82.55
87	ER12c	ExonRegion	0	122.00	64.60	127.35	71.68	382.95	109.62	233.04
88	ER12d	ExonRegion	0	116.80	75.93	149.36	91.03	402.09	120.15	289.74
89	ER12e	ExonRegion	0	149.55	92.28	186.73	116.10	416.35	141.46	398.96
90	E12_Dc	KnownBoundary	1	58.93	30.69	79.15	40.01	101.62	42.64	193.59
91	E12c_E12d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
92	E12_Ad	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
93	E12_Dd	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	E12d_E12d	NovelJunction	0	179.48	95.97	192.81	123.26	549.53	129.15	445.45
95	ER12f	ExonRegion	0	170.21	97.80	195.09	122.20	488.34	139.76	428.03
96	ER12g	ExonRegion	0	171.36	97.19	199.83	122.20	496.44	138.54	429.04
97	ER12h	ExonRegion	0	148.22	88.35	168.32	127.86	352.61	121.78	300.29
98	E12_De	KnownBoundary	0	117.00	89.43	122.22	119.15	271.38	105.81	251.80
99	ER12i	ExonRegion	0	64.24	55.78	81.09	60.06	144.04	68.93	143.20