Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHF7	Gene	0	4.35	1.73	2.13	1.44	21.22	2.88	15.70
2	327906	Transcript	0	3.79	0.00	0.60	0.00	2.12	1.21	5.46
3	347025	Transcript	0	0	0	0	0	0	0	0
4	294213	Transcript	0	6.00	0.81	0.86	1.61	0.00	2.41	9.99
5	394916	Transcript	0	0.38	0.00	0.06	0.00	0.31	0.20	0.73
6	ER1a	ExonRegion	0	2.44	2.17	2.15	1.79	18.60	1.13	16.19
7	E1_Da	NovelBoundary	0	4.12	5.60	8.74	4.63	39.35	2.71	24.44
8	E1a_E2a	KnownJunction	0	0.80	1.44	1.61	2.60	26.58	0.00	20.44
9	I1_AR1	ActiveIntronRegion	0	3.66	2.16	1.75	1.51	7.80	1.23	2.98
10	ER2a	ExonRegion	0	10.00	3.42	9.58	1.58	66.36	3.34	41.95
11	E2a_E3a	KnownJunction	0	11.65	3.49	9.71	3.14	81.84	2.14	44.03
12	ER3a	ExonRegion	0	12.31	1.26	7.72	2.19	100.50	3.52	52.54
13	E3a_E4a	KnownJunction	0	14.60	1.21	4.28	0.00	95.72	4.02	56.32
14	I3	Intron	0	4.32	1.30	0.84	1.33	7.80	1.09	0.84
15	I3_AR1	ActiveIntronRegion	0	4.34	1.30	0.84	1.34	7.84	1.10	0.84
16	E4_Aa	NovelBoundary	0	2.30	2.86	0.00	1.08	12.47	0.00	0.89
17	E4_Ab	NovelBoundary	0	18.23	3.44	4.81	2.36	34.53	6.08	39.10
18	ER4a	ExonRegion	0	19.88	2.43	7.09	2.24	83.47	8.26	62.29
19	ER4b	ExonRegion	0	18.54	7.29	4.14	2.02	77.08	6.19	40.28
20	E4_Da	NovelBoundary	0	3.62	2.57	0.59	0.00	14.94	0.00	3.01
21	E4a_E5a	KnownJunction	0	9.70	4.39	3.29	0.00	13.02	1.66	17.28
22	I4_AR1	ActiveIntronRegion	0	1.67	0.89	0.00	0.00	14.63	0.00	1.48
23	I4_SR1	SilentIntronRegion	0	18.07	0.60	3.45	0.64	61.92	2.44	32.47
24	ER5a	ExonRegion	0	10.64	2.43	3.03	2.02	18.23	3.21	15.62
25	E5_Da	KnownBoundary	0	3.20	0.00	0.89	0.00	13.79	1.66	4.40
26	E5a_E5b	KnownJunction	0	9.08	0.00	0.83	3.22	0.00	3.16	8.28
27	E5_Ab	KnownBoundary	0	5.46	0.00	2.03	3.01	6.13	1.66	4.16
28	ER5b	ExonRegion	0	12.14	1.21	2.71	3.74	21.87	2.45	11.33
29	ER5c	ExonRegion	0	8.05	0.05	2.37	3.62	14.92	2.92	7.11
30	E5b_E7a	KnownJunction	0	1.89	0.00	1.15	1.25	13.58	2.92	5.30
31	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.13	0.00	0.00
32	ER7a	ExonRegion	0	3.48	0.00	2.19	1.41	16.37	2.49	13.04
33	E7a_E8a	KnownJunction	0	4.11	0.00	2.34	0.00	18.30	2.52	16.41
34	ER8a	ExonRegion	0	4.17	0.58	1.58	2.17	17.50	5.72	17.41
35	E8a_E9a	KnownJunction	0	2.69	0.00	0.00	1.52	12.24	2.14	13.11
36	ER9a	ExonRegion	0	3.58	0.77	0.48	0.57	11.79	5.80	18.29
37	E9_Da	KnownBoundary	0	1.85	0.00	0.00	0.00	5.49	5.47	9.97
38	E9a_E9b	KnownJunction	0	2.92	1.63	0.89	0.00	0.00	1.66	11.69
39	E9_Ab	KnownBoundary	0	1.67	0.00	0.00	0.00	6.25	0.00	7.74
40	ER9b	ExonRegion	0	4.15	1.21	0.68	0.00	11.50	6.13	17.54
41	ER9c	ExonRegion	0	5.82	0.93	0.62	0.00	18.28	3.08	13.69
42	E9b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E9b_E10b	KnownJunction	0	3.79	0.00	0.60	0.00	2.12	1.21	5.46
44	E9b_E11a	KnownJunction	0	2.60	0.00	0.00	0.00	18.65	0.00	2.39
45	ER10a	ExonRegion	0	1.15	0.00	0.17	0.00	0.81	0.61	2.19
46	ER10b	ExonRegion	0	3.46	0.00	0.72	0.00	1.98	2.93	5.91
47	E10a_E11a	KnownJunction	0	0.68	0.00	0.69	0.00	0.00	0.00	4.79
48	ER11a	ExonRegion	0	2.65	0.53	0.17	0.00	11.95	2.24	7.59
49	E11_Da	KnownBoundary	0	2.54	1.60	0.00	0.00	10.47	2.44	9.16
50	ER11b	ExonRegion	0	2.10	1.05	0.00	0.09	10.38	0.67	8.68
51	E11b_E12a	KnownJunction	0	3.35	0.00	0.00	0.00	6.43	0.00	7.80
52	ER12a	ExonRegion	0	2.62	1.66	0.84	1.18	9.74	3.71	6.59