Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NEK10	Gene	0	4.44	3.26	8.76	9.49	1.05	10.25	1.21
2	396626	Transcript	0	0.00	0.00	0.00	0.00	0.26	0.00	0.00
3	341435	Transcript	0	0.00	0.07	0.00	0.00	0.00	0.00	0.07
4	357467	Transcript	0	2.24	0.60	1.34	3.02	0.79	3.21	0.65
5	396636	Transcript	0	0	0	0	0	0	0	0
6	383771	Transcript	0	0	0	0	0	0	0	0
7	295720	Transcript	0	1.33	1.86	0.97	1.65	0.00	0.93	0.00
8	383770	Transcript	0	4.27	0.00	6.27	1.44	0.00	2.22	0.00
9	ER1a	ExonRegion	0	0.67	0.91	0.00	0.48	1.25	0.47	0.52
10	E1a_E2a	KnownJunction	0	0.85	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	0.83	0.00	0.42	0.00	0.00	0.03	0.07
12	E2a_E3a	KnownJunction	0	0.00	0.00	1.84	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	7.75	3.75	14.93	8.66	3.01	6.87	2.03
14	E3a_E4a	KnownJunction	0	9.93	1.55	11.57	6.91	2.88	13.45	0.89
15	ER4a	ExonRegion	0	8.49	3.98	11.83	7.07	1.30	6.83	0.54
16	E4a_E5a	KnownJunction	0	6.63	5.46	12.53	8.94	1.01	3.54	0.00
17	ER5a	ExonRegion	0	5.75	3.12	9.64	7.97	0.89	9.11	0.39
18	E5a_E6a	KnownJunction	0	13.05	2.55	16.32	8.56	2.17	7.99	0.00
19	ER6a	ExonRegion	0	6.23	2.50	15.83	10.84	1.25	10.34	0.00
20	E6a_E7a	KnownJunction	0	0.78	1.00	12.40	16.55	1.18	13.02	0.00
21	ER7a	ExonRegion	0	7.46	3.10	14.30	16.58	2.46	6.84	0.21
22	E7a_E8a	KnownJunction	0	6.24	4.41	13.36	10.81	3.23	5.15	0.83
23	ER8a	ExonRegion	0	2.82	4.25	14.42	12.02	2.04	5.25	1.72
24	E8a_E9a	KnownJunction	0	0.00	3.18	10.58	13.63	0.99	8.74	1.72
25	ER9a	ExonRegion	0	1.81	5.29	10.69	10.62	1.67	8.61	1.22
26	E9a_E10a	KnownJunction	0	4.96	8.04	8.09	6.85	0.00	5.52	0.83
27	ER10a	ExonRegion	0	6.42	7.20	10.90	12.36	1.85	10.94	0.76
28	E10a_E11a	KnownJunction	0	5.91	4.83	8.48	14.47	2.35	15.38	0.82
29	ER11a	ExonRegion	0	3.90	5.83	9.81	10.01	1.52	14.13	1.79
30	E11a_E12a	KnownJunction	0	2.20	3.89	12.04	5.15	0.00	6.32	1.45
31	ER12a	ExonRegion	0	5.13	4.93	9.11	6.31	1.51	5.06	0.33
32	E12a_E13a	KnownJunction	0	2.90	3.76	8.64	10.57	0.00	4.58	0.00
33	ER13a	ExonRegion	0	2.49	5.58	10.11	10.57	1.04	9.26	0.77
34	E13a_E14a	KnownJunction	0	2.25	1.02	6.12	8.18	0.99	15.95	1.42
35	ER14a	ExonRegion	0	3.36	4.38	10.56	7.00	1.21	13.15	3.06
36	E14a_E15a	KnownJunction	0	3.14	7.20	12.60	2.74	3.20	8.87	2.92
37	ER15a	ExonRegion	0	3.63	5.37	13.97	7.62	1.35	10.12	3.09
38	E15a_E16a	KnownJunction	0	2.75	1.42	12.75	10.40	0.00	9.73	1.46
39	ER16a	ExonRegion	0	5.71	5.75	15.79	9.10	0.53	11.96	1.03
40	E16a_E17a	KnownJunction	0	7.38	9.51	19.47	10.57	0.00	14.66	0.00
41	ER17a	ExonRegion	0	8.29	5.36	16.01	15.54	1.37	11.07	3.12
42	E17a_E18a	KnownJunction	0	7.68	1.05	10.61	13.30	3.97	9.27	4.79
43	ER18a	ExonRegion	0	7.22	4.33	11.80	8.31	2.74	10.22	2.36
44	E18a_E19b	KnownJunction	0	6.53	3.94	10.10	6.72	3.09	6.59	1.52
45	ER19a	ExonRegion	0	0.77	0.40	1.13	0.69	0.27	0.68	0.22
46	ER19b	ExonRegion	0	6.36	3.99	15.75	8.84	1.93	13.28	2.02
47	E19a_E20a	KnownJunction	0	1.84	1.63	9.93	2.74	0.00	7.96	0.89
48	E19a_E21a	KnownJunction	0	4.56	1.39	1.58	6.20	2.10	5.52	1.46
49	ER20a	ExonRegion	0	2.61	2.12	9.52	3.35	1.75	10.80	0.22
50	E20a_E21a	KnownJunction	0	0.78	1.05	10.02	1.41	2.35	3.32	0.00
51	ER21a	ExonRegion	0	7.47	2.22	12.66	10.90	4.07	24.25	1.58
52	E21a_E22a	KnownJunction	1	9.40	3.70	9.13	9.10	4.26	30.44	1.78
53	E22_Ab	NovelBoundary	0	4.04	4.02	8.88	7.34	1.96	13.05	3.17
54	ER22a	ExonRegion	1	7.46	3.64	11.87	10.99	3.39	25.75	2.86
55	ER22b	ExonRegion	0	7.26	3.39	16.36	14.84	1.64	18.49	2.50
56	E22a_E23a	KnownJunction	0	8.24	1.08	13.91	18.07	2.95	7.50	0.00
57	ER23a	ExonRegion	0	5.52	2.13	10.94	18.00	2.63	11.58	1.45
58	E23a_E24a	KnownJunction	0	2.44	2.63	11.22	13.14	3.18	17.39	2.02
59	E23a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER24a	ExonRegion	0	2.91	5.37	9.37	16.60	0.56	11.29	2.04
61	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	E24a_E29a	KnownJunction	0	1.00	4.33	4.77	9.40	0.00	3.11	0.00
63	ER25a	ExonRegion	0	0.00	0.00	0.00	0.00	0.78	0.00	0.00
64	ER26a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER27a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	E27a_E28b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER28a	ExonRegion	0	0.00	0.20	0.00	0.00	0.00	0.00	0.22
68	ER28b	ExonRegion	0	0.39	0.80	0.00	0.60	0.00	0.49	0.66
69	E28_Da	NovelBoundary	0	6.38	2.50	5.27	11.73	0.99	8.04	2.87
70	E28a_E29a	KnownJunction	0	0.00	1.44	0.00	0.00	0.00	1.29	0.00
71	E28_Db	NovelBoundary	0	74.02	34.26	81.34	43.21	1.04	35.86	53.67
72	ER28c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER29a	ExonRegion	0	1.79	5.59	5.42	12.84	0.32	9.47	2.28
74	E29a_E30a	KnownJunction	1	1.74	2.84	9.73	27.28	0.00	7.80	4.16
75	ER30a	ExonRegion	0	2.24	4.55	6.08	17.23	0.74	12.52	2.57
76	E30a_E31a	KnownJunction	0	2.60	7.38	4.51	7.78	1.04	17.23	1.75
77	ER31a	ExonRegion	0	4.22	3.18	8.66	16.17	1.30	13.78	2.05
78	E31a_E32a	KnownJunction	0	3.25	0.00	7.06	14.79	0.00	11.12	0.00
79	ER32a	ExonRegion	0	4.76	2.55	11.21	14.77	0.88	8.81	0.65
80	E32a_E33a	KnownJunction	0	4.57	10.67	11.21	16.25	0.00	8.04	0.82
81	ER33a	ExonRegion	0	5.84	7.68	17.09	18.00	0.42	12.32	1.02
82	E33a_E34a	KnownJunction	0	5.77	3.55	15.79	19.29	0.92	9.89	1.33
83	ER34a	ExonRegion	0	4.60	4.11	11.44	13.54	0.43	7.13	0.81
84	E34a_E35a	KnownJunction	0	2.07	3.15	4.01	6.07	1.18	1.29	0.00
85	ER35a	ExonRegion	0	4.77	3.17	6.74	8.83	0.66	2.71	0.02
86	E35a_E36a	KnownJunction	0	1.00	1.39	1.60	9.32	0.00	4.72	0.00
87	E35a_E38a	KnownJunction	0	4.27	0.00	6.27	1.44	0.00	2.22	0.00
88	ER36a	ExonRegion	0	1.76	2.68	1.52	9.90	0.00	5.61	0.36
89	E36_Da	KnownBoundary	0	0.00	0.00	0.72	4.25	0.00	2.06	0.00
90	E36a_E37a	KnownJunction	0	0.00	0.00	0.63	1.38	0.00	0.00	0.00
91	E36a_E38a	KnownJunction	0	0.00	1.00	2.23	7.80	0.00	2.73	0.00
92	ER36b	ExonRegion	0	1.40	0.00	1.31	2.17	0.00	3.44	0.26
93	E37a_E38a	KnownJunction	0	2.64	3.15	1.45	1.54	0.00	2.68	0.00
94	ER37a	ExonRegion	0	1.36	2.43	0.84	2.04	0.00	0.12	0.00
95	ER38a	ExonRegion	0	7.65	4.10	13.40	11.52	0.64	11.09	1.67
96	E38a_E39a	KnownJunction	0	13.25	3.99	10.91	10.86	1.15	12.86	2.25
97	ER39a	ExonRegion	0	10.18	5.36	16.90	10.26	0.90	14.10	1.45
98	E39a_E40a	KnownJunction	0	6.19	3.13	14.30	16.23	0.00	19.78	0.89
99	ER40a	ExonRegion	0	9.33	2.54	12.17	15.71	0.49	22.51	1.77
100	E40a_E41a	KnownJunction	0	5.89	2.99	10.48	8.59	1.06	21.79	2.18
101	ER41a	ExonRegion	0	6.08	3.83	11.77	15.76	0.55	27.09	1.83
102	E41a_E42a	KnownJunction	0	7.03	3.05	13.80	19.42	0.00	19.99	0.67
103	ER42a	ExonRegion	0	6.09	1.37	9.51	13.78	0.00	18.63	1.12
104	E42a_E43a	KnownJunction	0	6.63	1.42	3.74	9.70	0.00	17.10	0.77
105	ER43a	ExonRegion	0	5.69	1.99	3.78	8.12	0.50	17.77	1.18
106	IG44_AR3	ActiveIntergenicRegion	0	4.18	1.27	4.65	9.92	0.97	13.45	1.10