Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COPS8	Gene	0	147.25	151.70	333.62	168.36	262.54	465.66	622.73
2	354371	Transcript	0	0	0	0	0	0	0	0
3	392008	Transcript	0	5.62	1.56	8.83	1.69	1.32	1.52	25.48
4	409334	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	409629	Transcript	0	0.00	0.00	0.75	0.00	0.00	1.29	0.89
6	ER1a	ExonRegion	0	0.82	0.50	1.11	0.87	1.66	0.35	2.16
7	E1_Ab	KnownBoundary	0	1.47	1.52	0.75	2.55	0.00	4.40	3.15
8	ER1b	ExonRegion	0	22.57	30.00	27.47	29.04	94.66	60.74	29.10
9	E1_Ac	KnownBoundary	0	200.11	119.82	310.51	126.73	345.93	291.53	485.81
10	ER1c	ExonRegion	0	25.61	98.21	54.12	81.39	89.84	237.97	66.48
11	E1a_E2a	KnownJunction	0	3.09	1.00	4.63	0.00	0.00	0.00	5.30
12	E1a_E3a	KnownJunction	0	37.55	121.16	85.03	80.81	46.06	315.03	135.96
13	E1a_E4a	NovelJunction	0	0.95	10.85	0.63	10.35	0.00	9.78	1.46
14	ER2a	ExonRegion	0	3.97	2.07	6.60	2.38	1.78	1.51	25.19
15	E2a_E3a	KnownJunction	0	9.81	1.60	15.26	2.68	2.19	3.06	45.96
16	ER3a	ExonRegion	0	174.53	217.56	360.79	215.95	91.60	610.77	633.86
17	E3a_E4a	KnownJunction	0	372.49	266.39	689.63	261.37	189.61	788.32	993.14
18	ER4a	ExonRegion	0	309.13	239.82	643.17	218.45	419.93	704.32	928.56
19	E4a_E5a	KnownJunction	0	115.89	161.36	351.96	159.97	551.72	521.63	622.89
20	E4a_E6a	NovelJunction	1	19.26	39.99	46.37	85.96	3.30	173.47	13.59
21	ER5a	ExonRegion	0	119.16	223.30	395.60	204.01	389.11	681.15	758.32
22	E5a_E6a	KnownJunction	0	134.65	248.82	468.76	232.55	411.82	764.78	1056.44
23	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER6a	ExonRegion	0	188.17	333.83	544.40	334.13	303.42	1012.06	1111.92
25	E6a_E7a	KnownJunction	0	153.26	362.44	481.38	380.63	301.28	1029.38	948.93
26	E6a_E7b	KnownJunction	0	0.00	0.00	0.75	0.00	0.00	1.29	0.89
27	E7_Ab	NovelBoundary	1	61.90	148.28	183.95	148.22	165.47	356.03	379.71
28	ER7a	ExonRegion	0	161.14	382.44	502.01	407.01	331.47	1072.26	1030.58
29	ER7b	ExonRegion	0	191.50	371.31	590.37	403.66	409.01	1090.56	1202.40
30	E7a_E8a	KnownJunction	0	180.25	276.38	542.22	340.45	477.86	963.59	1169.92
31	ER8a	ExonRegion	0	255.95	339.05	726.42	388.77	594.40	1159.82	1454.25
32	E8a_E9a	KnownJunction	0	218.72	294.37	570.90	316.88	664.52	942.41	1075.59
33	ER9a	ExonRegion	0	265.31	223.23	657.64	246.87	444.54	732.48	1072.99
34	E9_Da	KnownBoundary	0	252.13	205.86	595.26	230.41	563.69	648.34	1075.33
35	ER9b	ExonRegion	0	236.62	196.89	461.57	241.89	412.79	606.32	923.45
36	E9_Db	KnownBoundary	0	28.51	25.19	81.36	31.37	56.39	103.80	112.89
37	ER9c	ExonRegion	0	12.09	5.51	35.53	4.12	12.65	18.09	18.84
38	IG7_AR1	ActiveIntergenicRegion	0	1.60	5.47	7.40	3.31	7.79	1.05	3.04
39	IG7_SR2	SilentIntergenicRegion	0	13.34	8.86	40.98	8.97	14.73	11.95	17.44
40	IG7_AR2	ActiveIntergenicRegion	0	17.89	6.55	50.31	6.79	13.41	14.30	20.91
41	IG7_AR3	ActiveIntergenicRegion	0	18.09	7.62	47.36	4.42	14.06	16.05	16.13
42	IG7_AR4	ActiveIntergenicRegion	0	18.60	6.56	46.11	2.49	11.77	14.14	14.75
43	IG7_AR5	ActiveIntergenicRegion	0	12.29	5.39	41.74	1.56	5.87	14.41	13.70
44	IG7_AR6	ActiveIntergenicRegion	0	27.72	5.25	60.67	4.00	15.46	10.48	21.38
45	IG7_AR7	ActiveIntergenicRegion	0	18.11	7.14	31.76	5.82	9.10	9.99	11.18
46	IG7_SR3	SilentIntergenicRegion	0	18.09	8.10	34.76	6.53	7.00	10.66	13.20
47	IG7_AR8	ActiveIntergenicRegion	0	14.29	4.56	16.12	9.84	1.96	5.75	7.20
48	IG7_AR9	ActiveIntergenicRegion	0	23.23	16.20	34.39	17.05	7.59	18.85	13.23
49	IG7_AR11	ActiveIntergenicRegion	0	0.67	4.23	2.98	2.49	0.90	14.65	0.67
50	IG7_AR13	ActiveIntergenicRegion	0	2.83	0.66	6.12	2.76	0.63	15.61	0.36
51	IG7_SR8	SilentIntergenicRegion	0	1.59	1.43	3.91	1.59	0.48	9.52	0.29
52	IG7_AR14	ActiveIntergenicRegion	0	0.77	0.00	2.03	6.23	0.00	10.22	0.67
53	IG7_AR15	ActiveIntergenicRegion	0	1.14	0.59	2.70	1.74	0.39	10.23	0.17
54	IG7_AR22	ActiveIntergenicRegion	0	0.00	0.87	2.11	3.46	1.16	21.95	0.00
55	IG7_AR23	ActiveIntergenicRegion	0	0.00	1.15	1.29	1.59	0.33	11.28	0.00