Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTERFD2	Gene	0	16.82	13.00	25.43	14.97	51.21	12.52	30.72
2	391980	Transcript	0	0.56	0.22	0.49	0.06	0.22	0.22	1.35
3	407095	Transcript	0	0.58	4.01	2.04	0.00	1.95	0.00	1.20
4	401626	Transcript	0	0.74	2.18	0.59	0.22	1.59	0.43	1.56
5	241527	Transcript	0	7.80	3.67	11.69	6.40	21.60	4.17	11.78
6	406593	Transcript	0	16.67	6.49	32.99	13.82	73.01	7.56	23.29
7	ER1a	ExonRegion	0	0.56	0.22	0.49	0.06	0.22	0.22	1.35
8	E1_Ad	KnownBoundary	1	0.85	2.21	3.41	2.19	3.04	1.23	9.60
9	ER1b	ExonRegion	0	0.77	1.21	1.35	1.25	2.43	1.23	4.05
10	ER1c	ExonRegion	0	0.92	2.79	1.96	3.62	5.35	1.23	4.32
11	ER1d	ExonRegion	0	17.19	18.65	34.12	20.33	92.48	12.21	31.76
12	E1a_E2a	KnownJunction	0	26.20	29.00	35.64	26.52	169.35	14.85	46.25
13	E1a_E3a	KnownJunction	0	16.67	6.49	32.99	13.82	73.01	7.56	23.29
14	E1a_E5a	NovelJunction	0	4.04	0.00	4.58	0.00	22.36	0.00	4.34
15	E1a_E7a	NovelJunction	1	0.83	10.56	4.86	1.30	2.95	0.00	0.89
16	ER2a	ExonRegion	0	23.60	26.63	34.24	31.28	75.60	23.61	45.49
17	E2a_E3a	KnownJunction	0	29.93	18.47	38.84	33.89	69.73	26.88	52.08
18	E2a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER3a	ExonRegion	0	47.96	35.09	77.74	54.72	106.83	46.02	79.35
20	E3_Da	KnownBoundary	0	1.03	7.54	4.31	0.00	7.93	1.66	2.26
21	E3a_E4a	KnownJunction	0	46.21	34.65	66.15	52.56	104.18	55.96	83.55
22	E3a_E5a	NovelJunction	0	6.59	0.00	16.08	8.18	8.71	2.81	11.36
23	ER3b	ExonRegion	0	0.58	4.01	2.04	0.00	1.95	0.00	1.20
24	ER4a	ExonRegion	0	42.19	29.76	60.43	36.52	120.59	35.44	76.51
25	E4_Da	KnownBoundary	0	56.68	26.88	74.58	31.26	71.79	26.40	77.55
26	ER4b	ExonRegion	0	24.48	16.86	39.94	16.84	49.74	17.63	34.27
27	E4_Db	KnownBoundary	1	26.57	4.05	30.62	9.59	39.35	7.75	10.02
28	ER4c	ExonRegion	0	7.37	0.90	7.90	2.63	12.54	1.18	2.18
29	E4_Dc	NovelBoundary	0	6.76	5.96	9.70	3.52	9.27	11.28	7.68
30	E4c_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
31	E5_Aa	NovelBoundary	1	6.41	6.54	39.55	18.64	13.49	53.87	10.33
32	ER5a	ExonRegion	0	9.09	4.77	16.60	7.35	27.09	5.34	14.40
33	E5_Da	NovelBoundary	1	3.47	2.18	18.60	5.88	4.10	28.57	3.07
34	E5a_E7a	KnownJunction	0	13.74	6.70	21.17	17.09	31.17	10.37	21.93
35	E6_Aa	NovelBoundary	0	11.88	6.52	7.95	3.22	3.14	0.00	8.93
36	ER6a	ExonRegion	0	2.23	3.91	1.76	0.66	4.78	1.28	3.09
37	E6a_E7a	KnownJunction	0	0.00	2.63	0.00	0.00	0.00	0.00	1.59
38	ER7a	ExonRegion	0	16.08	14.00	28.22	24.04	50.91	14.30	27.74
39	E7a_E8a	KnownJunction	0	18.73	18.84	34.04	24.52	65.03	15.12	32.95
40	ER8a	ExonRegion	0	17.61	26.03	44.23	30.95	57.32	17.12	32.71
41	E8_Da	KnownBoundary	1	28.72	33.15	55.60	34.27	57.59	12.68	36.10
42	ER8b	ExonRegion	0	8.80	5.99	12.78	4.91	36.01	3.96	20.40