Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAPH1	Gene	0	218.60	135.25	104.44	133.36	44.38	234.07	117.61
2	374488	Transcript	1	23.33	24.62	14.74	47.25	3.11	44.65	19.30
3	308091	Transcript	0	0	0	0	0	0	0	0
4	374489	Transcript	0	8.86	15.37	6.58	6.31	6.96	10.88	0.77
5	374493	Transcript	0	0	0	0	0	0	0	0
6	355146	Transcript	0	113.98	0.97	78.52	0.00	0.00	1.98	0.00
7	319170	Transcript	0	211.70	112.18	100.45	115.38	43.53	199.86	126.68
8	ER1a	ExonRegion	0	6.43	47.82	5.53	39.61	2.77	53.35	6.56
9	E1a_E2a	KnownJunction	0	31.28	180.64	30.38	99.86	8.60	171.06	21.84
10	I1_AR1	ActiveIntronRegion	1	58.29	4.17	42.09	13.56	2.37	11.21	2.35
11	I1_AR6	ActiveIntronRegion	1	13.83	1.21	23.48	0.00	1.62	2.86	2.70
12	ER2a	ExonRegion	0	147.07	233.26	87.42	175.58	19.19	261.46	74.54
13	E2a_E3a	KnownJunction	0	216.92	303.59	132.49	227.29	39.28	325.56	93.58
14	ER3a	ExonRegion	0	230.85	330.98	164.63	248.11	41.04	373.72	116.30
15	E3a_E4a	KnownJunction	0	263.98	335.96	171.48	225.78	31.81	372.49	136.45
16	ER4a	ExonRegion	0	268.90	390.98	182.40	251.37	42.08	411.16	149.03
17	E4_Da	KnownBoundary	0	294.14	431.48	216.88	275.06	66.92	419.82	143.01
18	E4a_E17b	KnownJunction	0	113.98	0.97	78.52	0.00	0.00	1.98	0.00
19	ER4b	ExonRegion	0	383.30	351.46	200.09	281.95	64.61	381.62	177.66
20	E4_Db	NovelBoundary	1	46.87	57.90	34.43	23.33	2.14	29.53	6.95
21	E4b_E5a	KnownJunction	1	81.35	59.45	44.36	73.69	13.79	57.30	15.46
22	E4b_E6a	KnownJunction	0	23.33	24.62	14.74	47.25	3.11	44.65	19.30
23	E4b_E7a	KnownJunction	0	131.20	92.06	57.45	90.70	21.12	145.23	86.82
24	ER5a	ExonRegion	1	68.67	55.27	43.96	54.56	16.39	46.89	9.43
25	E5a_E6a	KnownJunction	1	33.85	32.71	25.28	49.71	3.87	31.62	6.97
26	E5a_E7a	KnownJunction	0	8.86	15.37	6.58	6.31	6.96	10.88	0.77
27	ER6a	ExonRegion	0	65.30	51.35	39.57	80.75	7.23	69.20	26.18
28	E6a_E7a	KnownJunction	0	54.23	46.95	34.37	64.34	3.48	79.01	22.46
29	ER7a	ExonRegion	0	170.22	134.91	87.75	146.66	36.66	162.41	101.37
30	E7a_E8a	KnownJunction	0	193.90	121.24	75.57	123.13	34.12	142.68	91.05
31	ER8a	ExonRegion	0	226.47	132.62	122.56	135.45	28.89	138.23	101.56
32	E8a_E9a	KnownJunction	0	239.40	168.64	120.87	143.50	32.90	184.11	97.04
33	ER9a	ExonRegion	0	343.23	185.54	172.14	168.10	36.97	223.98	125.40
34	E9_Da	NovelBoundary	1	33.48	9.41	29.79	11.81	0.92	7.56	1.46
35	E9a_E10a	KnownJunction	0	260.50	136.24	125.40	114.08	36.88	203.49	102.10
36	ER10a	ExonRegion	0	296.50	119.77	134.84	129.27	42.87	198.57	103.10
37	E10a_E11a	KnownJunction	0	310.32	117.88	146.42	127.73	52.33	186.12	101.09
38	ER11a	ExonRegion	0	422.45	201.12	180.22	205.43	53.20	311.17	131.65
39	E11a_E12a	KnownJunction	0	402.19	221.36	163.69	228.89	51.94	410.79	157.00
40	ER12a	ExonRegion	0	324.31	186.44	153.04	198.06	71.51	331.37	154.82
41	E12a_E13a	KnownJunction	0	322.10	171.21	127.34	126.30	64.39	270.70	152.24
42	I12_SR2	SilentIntronRegion	0	30.50	31.84	20.54	52.11	0.16	72.79	4.01
43	ER13a	ExonRegion	0	252.50	225.24	135.20	206.97	54.41	380.26	153.37
44	E13a_E14a	KnownJunction	0	191.57	277.16	107.75	249.51	41.96	424.11	148.77
45	ER14a	ExonRegion	0	240.30	283.33	134.89	257.62	67.06	422.45	181.74
46	E14a_E15a	KnownJunction	0	280.89	261.11	156.72	295.16	66.16	492.95	231.15
47	ER15a	ExonRegion	0	205.54	281.87	110.95	276.66	48.99	448.37	170.89
48	E15a_E16a	KnownJunction	1	110.40	73.77	33.44	81.41	50.74	95.49	9.19
49	E15a_E17a	KnownJunction	0	83.73	189.05	48.36	160.33	10.77	323.74	119.08
50	I15_SR2	SilentIntronRegion	0	32.06	13.67	31.11	15.06	1.20	9.49	8.50
51	E16_Aa	NovelBoundary	1	62.80	22.67	43.73	15.20	3.46	14.07	10.79
52	ER16a	ExonRegion	1	137.70	91.85	53.25	69.12	45.19	84.48	17.29
53	E16_Da	NovelBoundary	1	222.81	126.02	53.01	82.11	42.03	91.47	21.18
54	E17_Aa	NovelBoundary	1	126.19	139.53	39.00	74.91	25.87	93.69	21.30
55	ER17a	ExonRegion	0	114.39	112.87	44.53	130.92	23.80	198.60	75.76
56	E17_Da	KnownBoundary	0	196.22	110.63	99.26	133.53	51.43	149.44	102.77
57	ER17b	ExonRegion	0	246.47	134.84	122.71	142.52	58.66	191.75	153.45
58	E17_Ab	KnownBoundary	0	204.47	115.99	101.51	100.37	56.73	176.66	144.66
59	ER17c	ExonRegion	0	210.49	132.54	109.04	102.01	50.44	186.33	144.98
60	E17_Db	KnownBoundary	0	188.48	140.08	113.30	126.65	51.06	183.87	138.80
61	ER17d	ExonRegion	0	257.43	109.65	121.19	112.90	50.82	262.59	139.77
62	IG2	Intergenic	0	18.18	6.38	15.16	11.54	1.99	13.14	6.14
63	IG2_AR4	ActiveIntergenicRegion	0	23.67	8.74	17.50	16.52	3.72	6.65	6.52
64	IG2_SR4	SilentIntergenicRegion	0	30.13	7.25	18.41	11.22	1.10	7.50	6.75
65	IG2_AR2	ActiveIntergenicRegion	0	17.58	5.89	15.44	13.41	2.47	14.78	6.01
66	IG2_SR2	SilentIntergenicRegion	0	16.32	7.16	14.60	10.57	1.37	15.23	7.77
67	IG2_AR1	ActiveIntergenicRegion	0	17.03	3.64	17.61	6.86	0.00	13.49	10.12
68	IG2_SR1	SilentIntergenicRegion	0	14.91	5.42	13.41	7.96	1.43	13.63	4.75