Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CENTG2	Gene	0	132.54	60.69	21.00	10.00	52.30	18.35	50.57
2	409457	Transcript	0	2.52	3.82	0.17	0.62	0.52	2.38	0.78
3	402604	Transcript	0	1.69	0.00	0.00	0.00	0.00	1.53	1.62
4	304032	Transcript	0	131.64	35.45	18.78	4.27	28.37	7.89	64.48
5	336665	Transcript	0	0	0	0	0	0	0	0
6	409538	Transcript	1	20.18	6.90	4.56	0.58	18.20	7.95	15.77
7	ER1a	ExonRegion	0	2.18	9.83	0.29	1.38	0.27	0.67	0.46
8	E1_Ab	KnownBoundary	1	67.99	51.89	2.96	9.29	12.70	2.20	8.66
9	ER1b	ExonRegion	1	119.23	115.03	16.48	23.46	20.99	14.20	25.77
10	E1a_E3a	KnownJunction	1	172.46	194.17	24.47	24.30	22.55	13.78	44.67
11	I1_AR1	ActiveIntronRegion	1	49.31	3.64	6.10	2.49	3.51	1.23	3.26
12	I1_AR2	ActiveIntronRegion	0	49.18	3.64	6.37	1.50	6.32	1.23	4.59
13	I1_AR3	ActiveIntronRegion	0	46.83	3.49	6.52	1.25	9.01	0.00	5.52
14	I1_AR4	ActiveIntronRegion	0	49.18	2.43	7.45	1.25	8.19	0.00	6.00
15	I1_AR5	ActiveIntronRegion	0	53.41	2.55	8.67	0.50	8.67	0.00	5.06
16	I1_AR6	ActiveIntronRegion	0	49.40	3.09	7.29	0.59	2.66	0.00	5.41
17	I1_AR10	ActiveIntronRegion	0	19.20	23.00	3.02	2.33	4.77	5.29	2.32
18	I1_SR5	SilentIntronRegion	0	29.31	5.74	5.15	1.07	4.40	1.57	3.20
19	I1_AR20	ActiveIntronRegion	0	27.06	6.55	3.86	0.00	5.39	1.17	4.19
20	I1_SR9	SilentIntronRegion	1	27.51	6.20	6.91	0.00	3.00	0.51	4.12
21	I1_AR21	ActiveIntronRegion	0	35.98	8.20	4.88	0.00	2.51	1.80	2.63
22	I1_AR24	ActiveIntronRegion	0	35.85	6.79	5.53	0.22	4.11	0.66	2.42
23	I1_AR1	ActiveIntronRegion	0	35.13	2.43	5.71	0.00	0.81	0.00	2.70
24	I1_AR4	ActiveIntronRegion	1	38.84	3.59	4.09	0.84	4.85	0.00	1.47
25	I1_AR6	ActiveIntronRegion	0	41.86	5.02	6.16	1.25	4.19	2.49	2.99
26	I1_AR19	ActiveIntronRegion	1	44.61	3.31	3.50	0.00	1.71	0.00	0.71
27	I1_AR20	ActiveIntronRegion	1	46.71	6.07	3.09	0.00	4.05	0.00	0.67
28	I1_AR21	ActiveIntronRegion	1	39.85	6.07	2.71	0.00	4.86	0.00	0.67
29	I1_AR23	ActiveIntronRegion	1	35.48	6.49	2.01	0.00	3.24	0.00	0.65
30	I1_AR24	ActiveIntronRegion	1	31.89	6.77	1.16	0.00	2.08	0.09	0.67
31	I1_AR28	ActiveIntronRegion	1	33.42	7.63	4.19	0.00	2.89	0.55	2.07
32	I1_SR16	SilentIntronRegion	0	27.51	4.41	3.36	0.40	2.68	1.06	1.50
33	I1_AR31	ActiveIntronRegion	1	30.43	3.78	2.51	0.43	1.80	0.00	0.79
34	I1_SR22	SilentIntronRegion	1	26.68	3.94	3.14	0.83	2.04	0.37	0.80
35	ER2a	ExonRegion	0	0.59	1.32	0.03	0.13	0.96	5.03	2.26
36	E2a_E3a	KnownJunction	1	0.00	0.00	0.00	0.00	7.49	12.94	14.89
37	ER3a	ExonRegion	0	241.41	181.01	33.46	31.03	39.07	31.21	63.67
38	E3a_E4a	KnownJunction	0	269.83	145.57	40.12	22.95	45.62	37.20	62.57
39	E3a_E5a	NovelJunction	1	3.19	12.61	0.85	6.91	0.00	0.00	2.32
40	ER4a	ExonRegion	0	232.62	156.01	36.72	25.80	52.81	31.43	72.24
41	E4a_E5a	KnownJunction	0	195.91	161.94	35.88	21.56	50.95	31.62	74.61
42	ER5a	ExonRegion	0	233.55	168.99	42.42	27.35	73.82	35.00	88.54
43	E5a_E6a	KnownJunction	0	227.12	138.48	38.73	28.23	71.51	32.11	82.45
44	ER6a	ExonRegion	0	288.70	196.83	47.56	30.06	110.50	46.67	124.10
45	E6_Da	NovelBoundary	1	39.86	1.58	3.84	1.41	2.26	0.00	0.69
46	E6a_E7a	KnownJunction	0	295.98	189.63	47.08	38.42	102.86	58.40	110.52
47	I6_AR1	ActiveIntronRegion	1	60.63	1.78	3.94	0.52	3.29	1.54	1.12
48	I6_AR6	ActiveIntronRegion	1	28.32	1.10	2.16	0.00	2.69	0.00	0.99
49	ER7a	ExonRegion	0	321.58	232.05	53.76	39.63	139.40	38.92	157.65
50	E7a_E8a	KnownJunction	0	346.12	223.68	71.41	24.71	128.38	33.23	181.95
51	ER8a	ExonRegion	0	297.93	268.74	57.43	38.98	127.86	53.55	155.44
52	E8a_E9a	KnownJunction	0	282.24	214.35	56.56	30.88	104.36	51.72	144.65
53	ER9a	ExonRegion	0	291.17	197.54	61.10	27.15	132.32	59.90	143.41
54	E9a_E10a	KnownJunction	0	287.87	146.67	41.95	24.27	68.19	48.27	93.23
55	ER10a	ExonRegion	0	336.16	168.67	56.01	27.88	140.71	56.98	124.28
56	E10_Da	NovelBoundary	1	27.14	28.03	3.98	0.00	3.34	5.57	1.43
57	E10a_E11a	KnownJunction	0	2.17	2.57	0.00	0.00	0.00	1.63	0.00
58	E10a_E12a	KnownJunction	0	409.77	185.66	71.79	46.11	177.69	68.02	202.49
59	I10_AR1	ActiveIntronRegion	0	27.22	22.82	1.66	2.46	2.30	3.24	1.95
60	ER11a	ExonRegion	0	1.66	0.49	0.00	0.00	0.83	3.76	0.17
61	E11_Da	KnownBoundary	0	1.79	0.00	0.00	0.00	0.90	4.05	0.00
62	E11a_E11b	KnownJunction	0	1.69	0.00	0.00	0.00	0.00	1.53	1.62
63	E11_Ab	KnownBoundary	0	0.93	0.00	0.00	0.00	0.00	0.00	1.61
64	ER11b	ExonRegion	0	1.54	0.00	0.00	0.00	0.81	3.68	0.67
65	ER11c	ExonRegion	0	2.28	0.00	0.38	0.00	0.71	2.76	0.67
66	E11_Db	KnownBoundary	0	5.62	1.29	0.70	0.00	2.03	1.45	0.67
67	ER11d	ExonRegion	0	3.85	1.64	0.23	0.48	0.48	2.78	1.21
68	ER12a	ExonRegion	0	511.43	206.60	82.10	35.33	209.73	55.56	199.77
69	E12a_E13a	KnownJunction	0	451.91	217.95	63.56	33.86	186.73	67.80	227.11
70	ER13a	ExonRegion	0	459.62	208.24	66.47	32.39	161.22	57.71	209.61
71	E13a_E14a	KnownJunction	0	189.83	49.44	25.97	4.58	44.28	12.14	83.80
72	E13a_E15a	KnownJunction	0	121.20	81.57	22.71	11.97	84.05	31.76	80.13
73	I13_AR1	ActiveIntronRegion	0	56.02	14.36	6.33	2.32	7.58	2.52	6.44
74	I13_SR2	SilentIntronRegion	0	35.64	8.24	3.63	1.30	3.65	3.62	3.38
75	I13_AR3	ActiveIntronRegion	0	30.40	6.41	2.93	0.00	2.95	2.72	2.67
76	ER14a	ExonRegion	0	104.42	34.59	14.37	5.44	28.35	6.90	60.41
77	E14a_E15a	KnownJunction	0	100.66	22.33	15.99	2.79	12.47	4.64	49.23
78	ER15a	ExonRegion	0	163.00	93.90	22.78	9.43	87.39	28.84	93.03
79	E15a_E16a	KnownJunction	0	133.84	48.55	18.52	5.20	63.12	21.36	64.18
80	ER16a	ExonRegion	1	135.63	65.25	14.52	10.15	56.97	21.55	74.36
81	E16a_E17a	KnownJunction	1	176.80	89.53	49.32	43.29	49.82	40.15	91.16
82	ER17a	ExonRegion	0	163.67	77.39	27.22	11.41	71.34	19.10	82.61
83	E17a_E18a	KnownJunction	0	206.75	123.58	55.08	65.83	79.92	89.56	152.00
84	ER18a	ExonRegion	0	154.80	91.39	22.47	18.73	65.98	28.13	84.94
85	E18a_E19a	KnownJunction	0	135.17	73.69	21.50	21.08	49.61	29.05	65.21
86	I18_AR2	ActiveIntronRegion	0	32.07	4.23	4.67	0.00	5.84	0.13	3.94
87	I18_AR6	ActiveIntronRegion	0	46.66	7.34	6.66	2.30	7.38	1.23	5.68
88	I18_AR8	ActiveIntronRegion	0	35.68	2.53	2.97	0.61	4.49	0.70	6.83
89	ER19a	ExonRegion	0	140.00	65.38	16.79	13.14	56.10	27.14	61.47
90	E19a_E20a	KnownJunction	1	204.17	185.98	40.41	72.63	99.63	113.15	146.54
91	ER20a	ExonRegion	0	245.80	64.88	36.41	12.49	84.25	26.07	62.45
92	E20_Da	KnownBoundary	1	62.74	13.16	16.76	2.79	36.75	19.46	31.99
93	ER20b	ExonRegion	0	59.95	19.38	13.67	1.61	46.14	5.87	30.15
94	IG48	Intergenic	0	27.27	7.66	5.30	2.06	24.55	3.24	14.46
95	IG48_AR1	ActiveIntergenicRegion	0	37.66	12.90	10.34	4.14	29.98	4.08	23.20
96	IG48_SR1	SilentIntergenicRegion	0	46.43	16.04	12.94	3.92	42.36	5.86	30.31
97	IG48_AR2	ActiveIntergenicRegion	0	45.05	21.25	8.99	3.22	54.43	7.04	41.44
98	IG48_SR2	SilentIntergenicRegion	0	55.73	26.20	8.99	6.10	55.26	6.61	39.29
99	IG48_AR3	ActiveIntergenicRegion	0	71.86	16.53	12.78	5.12	63.07	8.22	32.13