Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SP100	Gene	0	67.28	69.18	53.23	55.13	4.61	96.98	55.81
2	409824	Transcript	0	10.23	21.68	5.31	20.81	0.40	28.14	12.03
3	409341	Transcript	0	0	0	0	0	0	0	0
4	341950	Transcript	0	0.00	1.26	0.00	0.41	0.00	0.00	0.00
5	409112	Transcript	0	6.15	8.44	5.41	5.65	0.00	5.65	5.58
6	264052	Transcript	0	16.73	4.48	15.81	7.20	0.50	9.41	11.71
7	340126	Transcript	0	61.28	38.61	42.42	34.31	1.21	65.70	26.75
8	409897	Transcript	0	1.15	0.76	0.61	0.05	0.05	0.00	0.95
9	ER1a	ExonRegion	0	12.68	15.64	7.71	20.57	0.81	33.26	17.29
10	ER1b	ExonRegion	0	24.91	40.22	17.65	40.36	0.81	71.17	35.82
11	E1_Ad	KnownBoundary	1	84.18	134.30	39.52	91.16	0.00	152.36	80.44
12	ER1c	ExonRegion	0	41.45	67.76	22.79	63.39	0.52	99.58	53.01
13	E1a_E3a	KnownJunction	0	32.73	42.09	14.73	27.23	0.00	35.38	36.66
14	E1a_E5a	KnownJunction	0	7.78	27.72	2.92	21.05	0.00	23.02	6.76
15	ER1d	ExonRegion	1	47.27	81.55	22.14	69.35	0.00	101.48	62.50
16	ER2a	ExonRegion	0	0.47	0.01	0.00	0.02	0.33	0.00	0.00
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER3a	ExonRegion	1	33.49	90.98	17.42	53.54	0.04	87.42	60.40
19	E3a_E4a	KnownJunction	0	0.77	0.00	0.76	0.00	0.00	0.00	0.00
20	E3a_E5a	KnownJunction	0	52.14	152.69	38.96	81.33	0.00	153.32	96.09
21	E3a_E11a	NovelJunction	0	1.89	0.00	1.60	9.08	0.00	4.07	0.00
22	ER4a	ExonRegion	0	1.00	2.03	1.07	0.00	0.00	0.01	0.24
23	E4a_E5a	KnownJunction	0	0.98	1.21	0.00	0.00	0.00	0.00	0.86
24	ER5a	ExonRegion	0	137.41	247.38	105.79	134.92	1.07	274.30	156.06
25	E5a_E6a	KnownJunction	0	164.96	356.90	121.76	199.26	1.08	386.99	160.97
26	E5a_E7a	NovelJunction	0	0.70	8.01	5.33	4.93	0.00	16.64	0.00
27	ER6a	ExonRegion	0	198.54	346.43	151.72	222.09	0.75	367.97	212.84
28	E6a_E7a	KnownJunction	0	193.47	276.27	139.90	202.86	1.18	318.33	179.19
29	ER7a	ExonRegion	0	137.14	270.64	118.69	196.08	0.68	277.03	175.39
30	E7a_E8a	KnownJunction	0	115.73	219.89	107.43	178.23	2.24	240.96	185.23
31	ER8a	ExonRegion	0	161.96	239.29	126.34	164.22	0.80	270.75	228.26
32	E8a_E9a	KnownJunction	0	172.76	229.53	103.98	147.05	0.00	223.78	200.71
33	I8	Intron	0	12.45	19.09	7.44	15.44	0.30	23.32	0.38
34	I8_AR1	ActiveIntronRegion	0	12.50	19.18	7.48	15.51	0.30	23.43	0.38
35	E9_Aa	NovelBoundary	1	45.36	48.21	23.42	45.00	0.99	58.80	3.60
36	ER9a	ExonRegion	0	151.14	248.11	115.77	183.33	0.23	264.98	193.51
37	E9a_E10a	KnownJunction	0	160.76	241.72	111.53	146.75	0.00	222.33	218.20
38	E9a_E11a	NovelJunction	1	8.06	16.03	13.80	32.16	0.00	34.87	0.80
39	E9a_E12a	NovelJunction	1	0.00	1.05	1.32	11.49	0.00	12.09	0.00
40	ER10a	ExonRegion	0	136.00	249.64	97.87	141.01	1.52	203.15	185.75
41	E10a_E11a	KnownJunction	0	122.07	191.65	76.19	114.92	0.00	141.23	150.12
42	E10a_E12a	NovelJunction	0	1.87	20.68	5.65	16.17	0.00	38.08	5.14
43	ER11a	ExonRegion	0	207.30	230.54	126.13	176.20	1.69	212.91	203.93
44	E11a_E12a	KnownJunction	0	190.92	249.58	110.75	171.81	1.04	252.29	188.70
45	ER12a	ExonRegion	0	208.40	248.66	117.11	183.35	2.96	250.79	173.75
46	E12a_E13a	KnownJunction	0	226.03	168.50	113.61	133.10	1.11	159.81	161.31
47	E12a_E14a	NovelJunction	1	32.56	70.93	26.18	97.66	2.35	122.29	0.82
48	ER13a	ExonRegion	0	275.05	219.22	128.07	166.72	1.43	234.87	195.22
49	E13a_E14a	KnownJunction	0	242.81	181.25	111.49	145.13	3.41	203.38	153.27
50	ER14a	ExonRegion	0	234.26	210.33	133.12	162.98	2.05	230.46	161.38
51	E14a_E15a	KnownJunction	0	195.22	219.94	128.99	173.44	1.13	252.32	133.60
52	E14a_E16a	NovelJunction	0	0.93	11.51	2.37	17.26	0.00	22.67	0.89
53	ER15a	ExonRegion	0	159.96	193.17	93.00	157.05	2.30	193.96	115.00
54	E15a_E16a	KnownJunction	0	139.86	187.05	79.78	118.42	0.99	172.97	112.56
55	ER16a	ExonRegion	0	132.85	175.14	92.81	144.97	1.33	221.61	113.46
56	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	E16a_E19a	KnownJunction	0	109.35	155.19	77.25	170.24	0.00	234.47	102.83
58	ER17a	ExonRegion	0	0.00	2.43	0.00	0.00	0.00	0.00	0.00
59	ER18a	ExonRegion	0	0.00	1.36	0.00	1.23	0.00	0.00	0.00
60	ER19a	ExonRegion	0	106.86	175.50	79.06	162.12	0.38	235.76	114.59
61	E19_Da	KnownBoundary	1	79.59	162.91	38.87	121.64	2.12	211.02	84.71
62	E19a_E20a	KnownJunction	0	16.32	25.09	24.99	27.66	0.00	38.06	13.80
63	ER19b	ExonRegion	0	75.14	98.30	35.91	78.60	0.65	156.34	57.09
64	E19_Db	KnownBoundary	0	21.11	8.38	8.26	9.62	0.00	26.13	14.63
65	ER19c	ExonRegion	0	14.13	5.60	5.39	4.90	0.00	13.66	9.35
66	ER19d	ExonRegion	0	3.66	1.31	1.82	0.29	0.00	0.00	4.62
67	ER20a	ExonRegion	0	22.01	34.64	37.68	42.43	0.00	82.40	27.82
68	E20a_E21a	KnownJunction	0	38.30	60.66	44.13	45.89	0.00	88.47	55.29
69	ER21a	ExonRegion	0	58.57	54.29	56.17	50.96	0.00	91.38	55.04
70	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER22a	ExonRegion	0	64.69	37.44	76.44	56.22	0.00	92.49	53.98
72	E22a_E23a	KnownJunction	0	50.15	32.18	63.43	45.73	0.00	83.78	40.10
73	E22a_E24a	NovelJunction	0	5.51	4.73	5.45	9.18	0.00	16.48	7.42
74	ER23a	ExonRegion	0	45.75	29.45	57.92	43.44	0.00	73.48	52.75
75	E23a_E24a	KnownJunction	0	45.58	31.00	44.53	34.46	0.00	73.86	51.99
76	ER24a	ExonRegion	0	51.64	29.40	67.96	30.37	0.00	63.86	54.54
77	E24a_E25a	KnownJunction	0	49.02	18.50	75.30	28.17	0.00	40.79	41.93
78	ER25a	ExonRegion	0	64.53	34.27	79.74	33.62	0.00	69.70	50.41
79	E25a_E26a	KnownJunction	0	65.93	30.11	58.83	36.36	0.00	73.00	52.62
80	ER26a	ExonRegion	0	59.98	33.97	64.59	33.89	0.00	72.87	40.42
81	E26_Da	NovelBoundary	0	17.99	29.48	18.42	13.46	0.00	21.63	7.97
82	E26a_E27a	KnownJunction	1	48.98	26.53	43.20	9.05	0.00	39.29	23.96
83	E26a_E28a	NovelJunction	0	0.00	2.76	3.97	2.68	0.00	13.02	0.53
84	I26	Intron	0	13.35	13.01	11.77	8.96	0.07	20.41	9.86
85	I26_AR1	ActiveIntronRegion	1	15.28	17.09	12.18	12.93	0.00	28.63	12.09
86	I26	Intron	0	26.43	14.26	14.50	15.77	0.00	22.40	11.72
87	I26_SR1	SilentIntronRegion	0	26.47	14.29	14.52	15.79	0.00	22.44	11.74
88	E27_Aa	NovelBoundary	0	22.53	8.62	18.26	12.81	0.00	17.74	14.04
89	ER27a	ExonRegion	0	53.55	32.96	46.01	24.01	0.00	52.97	33.76
90	E27_Da	KnownBoundary	0	5.86	10.67	4.73	5.88	0.00	6.99	6.03
91	E27a_E28a	KnownJunction	0	40.34	25.01	35.42	34.49	0.00	43.71	24.03
92	ER27b	ExonRegion	0	6.15	8.44	5.41	5.65	0.00	5.65	5.58
93	ER28a	ExonRegion	0	38.37	31.99	41.93	31.17	0.00	48.98	34.13
94	E28a_E29a	KnownJunction	0	11.80	2.76	14.70	3.90	0.00	8.15	8.70
95	E28a_E30a	KnownJunction	0	13.92	28.03	23.28	27.28	0.00	36.42	22.19
96	E29_Aa	NovelBoundary	0	645.92	472.26	983.78	530.82	655.42	700.52	477.85
97	ER29a	ExonRegion	0	21.66	6.21	16.91	10.49	0.99	10.68	14.72
98	ER30a	ExonRegion	0	44.73	36.80	35.69	37.40	0.00	49.94	22.87
99	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
100	ER31a	ExonRegion	1	71.89	44.70	50.06	46.73	0.34	76.03	29.85
101	E31a_E32a	KnownJunction	1	87.09	60.14	53.72	42.78	0.00	111.65	23.65
102	ER32a	ExonRegion	1	105.23	55.36	59.10	48.60	0.00	98.57	32.08
103	E32a_E33a	KnownJunction	1	98.24	41.64	55.76	38.96	0.00	75.71	30.64
104	ER33a	ExonRegion	1	75.45	40.14	50.72	32.33	0.27	70.35	30.98
105	E33a_E34a	KnownJunction	0	61.32	42.82	42.02	35.00	0.00	56.25	39.86
106	ER34a	ExonRegion	0	54.97	36.43	53.81	34.03	11.45	82.05	35.42