Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATF2	Gene	0	122.12	96.07	145.01	135.10	130.55	210.39	63.28
2	345739	Transcript	0	1.66	1.09	3.68	2.54	8.32	6.44	1.53
3	409635	Transcript	0	0	0	0	0	0	0	0
4	409833	Transcript	0	1.43	1.62	3.07	0.90	0.65	0.42	0.57
5	392544	Transcript	0	0	0	0	0	0	0	0
6	392543	Transcript	0	0	0	0	0	0	0	0
7	409499	Transcript	0	0	0	0	0	0	0	0
8	264110	Transcript	0	0	0	0	0	0	0	0
9	409437	Transcript	0	0.00	0.00	0.00	1.22	0.00	0.00	0.00
10	ER1a	ExonRegion	0	1.54	0.00	4.74	0.00	2.23	3.06	0.00
11	ER1b	ExonRegion	1	14.37	25.80	35.90	45.48	25.80	38.08	9.35
12	E1_Ac	KnownBoundary	1	31.73	52.83	69.14	86.88	57.72	73.54	21.80
13	ER1c	ExonRegion	0	55.68	74.56	93.74	113.89	72.39	130.71	44.86
14	E1a_E2a	KnownJunction	0	44.11	104.88	75.54	139.41	47.60	190.31	33.28
15	ER2a	ExonRegion	0	67.45	131.95	131.71	182.43	48.18	236.70	68.93
16	E2a_E3a	KnownJunction	0	4.94	7.88	5.83	10.19	3.00	16.99	1.76
17	E2a_E4a	KnownJunction	0	113.17	143.31	187.49	222.09	129.56	330.66	98.94
18	ER2b	ExonRegion	0	116.38	153.13	210.20	237.15	106.05	322.94	105.54
19	ER3a	ExonRegion	0	5.64	11.38	6.37	10.87	4.65	24.84	3.30
20	E3a_E4a	KnownJunction	0	2.82	9.90	3.20	8.05	5.33	19.97	3.54
21	ER4a	ExonRegion	0	155.17	179.57	232.03	252.22	191.81	380.06	112.39
22	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	E4a_E6a	KnownJunction	0	189.20	202.89	253.97	250.38	230.07	440.53	108.29
24	ER5a	ExonRegion	0	0.02	0.06	0.06	0.04	0.04	0.12	0.00
25	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER6a	ExonRegion	0	212.54	207.93	289.59	268.36	192.68	472.24	103.82
27	E6a_E7a	KnownJunction	0	95.82	116.96	125.40	137.89	127.92	235.14	77.82
28	E6a_E8a	KnownJunction	1	100.44	75.22	160.49	137.38	49.19	212.52	23.17
29	E6a_E13a	NovelJunction	0	0.00	6.62	0.00	3.06	0.00	10.80	0.80
30	E6a_E15a	KnownJunction	0	0.80	0.00	0.00	0.00	0.00	0.00	0.00
31	ER7a	ExonRegion	0	188.67	158.88	237.80	190.37	129.22	304.62	111.90
32	E7a_E8a	KnownJunction	0	193.45	191.49	272.81	215.46	130.59	371.02	99.32
33	ER8a	ExonRegion	0	367.12	265.41	477.90	355.47	238.04	623.73	130.30
34	E8a_E9a	KnownJunction	0	367.10	232.87	471.17	307.84	404.85	589.11	118.65
35	E8a_E10a	NovelJunction	0	3.14	4.07	7.90	7.94	1.18	8.79	0.00
36	ER9a	ExonRegion	0	237.14	198.87	327.05	279.74	215.11	468.39	131.01
37	E9a_E10a	KnownJunction	0	188.23	226.43	249.25	297.54	200.05	495.80	135.59
38	E9a_E12a	KnownJunction	0	0.00	0.00	0.00	1.22	0.00	0.00	0.00
39	ER10a	ExonRegion	0	209.29	239.92	270.92	334.26	264.22	498.51	162.32
40	E10_Da	KnownBoundary	0	3.42	4.07	1.60	1.38	0.00	0.00	0.00
41	E10a_E11a	KnownJunction	0	278.61	294.50	292.13	412.00	245.84	514.53	183.47
42	ER10b	ExonRegion	0	1.43	1.62	3.07	0.90	0.65	0.42	0.57
43	ER11a	ExonRegion	0	240.70	235.51	248.27	326.13	290.84	440.03	153.32
44	E11a_E12a	KnownJunction	0	352.94	216.27	335.88	335.55	328.71	444.77	187.97
45	E11a_E13a	NovelJunction	0	0.62	5.44	0.78	4.52	0.00	12.68	0.00
46	ER12a	ExonRegion	0	345.54	231.63	312.71	338.67	326.36	439.25	159.53
47	E12a_E13a	KnownJunction	0	264.90	198.53	225.92	262.16	247.61	338.48	102.86
48	ER13a	ExonRegion	0	187.88	195.29	206.95	258.78	198.26	319.83	112.17
49	E13a_E14a	KnownJunction	0	137.76	148.25	163.94	155.31	136.47	229.59	62.66
50	ER14a	ExonRegion	0	147.00	138.73	183.70	181.43	158.56	258.43	89.36
51	E14a_E15a	KnownJunction	0	138.69	94.58	144.84	140.58	144.86	234.07	73.63
52	I14_AR4	ActiveIntronRegion	1	27.99	9.88	19.60	6.63	11.88	5.08	2.56
53	ER15a	ExonRegion	0	182.66	165.09	202.54	220.47	172.02	308.53	99.33
54	E15a_E16a	KnownJunction	0	164.45	119.32	193.45	192.92	156.78	265.10	99.40
55	I15	Intron	0	28.01	11.92	21.54	9.87	16.40	13.09	10.46
56	I15_SR1	SilentIntronRegion	0	31.50	10.94	24.64	9.74	15.47	9.92	10.19
57	I15_AR3	ActiveIntronRegion	0	34.73	20.63	26.54	13.50	26.76	28.21	12.89
58	I15_AR4	ActiveIntronRegion	1	35.37	15.93	22.56	13.25	32.29	25.71	19.15
59	E16_Aa	NovelBoundary	0	45.50	21.86	32.99	14.03	22.80	25.75	18.99
60	ER16a	ExonRegion	0	153.44	127.67	161.84	174.27	166.58	244.68	78.46
61	E16_Da	KnownBoundary	0	97.87	51.91	95.52	71.01	78.66	121.38	26.99
62	ER16b	ExonRegion	0	105.01	35.07	144.53	46.36	78.12	88.76	35.01
63	E16_Db	KnownBoundary	0	80.96	44.35	143.62	49.44	81.42	88.84	34.24
64	ER16c	ExonRegion	0	96.33	55.88	106.76	86.04	119.60	154.29	42.58
65	ER16d	ExonRegion	0	1.79	2.19	2.62	5.07	14.42	9.81	3.06