Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PPIL3	Gene	0	51.48	8.47	34.21	13.15	179.60	9.57	74.09
2	409449	Transcript	0	11.28	4.09	3.22	1.22	141.57	0.68	12.60
3	409264	Transcript	0	1.34	0.00	0.68	0.00	0.00	0.00	0.00
4	234288	Transcript	0	2.01	0.43	1.84	0.50	0.75	0.45	0.54
5	334509	Transcript	1	3.04	4.10	10.20	3.12	24.80	0.00	26.34
6	286175	Transcript	0	0	0	0	0	0	0	0
7	392283	Transcript	0	0	0	0	0	0	0	0
8	409361	Transcript	0	0.00	0.00	0.85	0.00	1.64	0.00	1.73
9	ER1a	ExonRegion	0	2.31	0.17	0.80	1.25	22.70	0.00	1.20
10	ER1b	ExonRegion	1	18.20	6.83	4.76	1.25	199.20	0.77	18.57
11	E1_Da	KnownBoundary	0	7.28	1.52	1.49	0.00	24.39	0.00	2.57
12	E1a_E2c	KnownJunction	1	20.24	8.01	5.65	1.19	260.43	1.37	23.99
13	E1a_E3a	NovelJunction	0	1.90	0.00	0.00	0.00	13.39	0.00	1.52
14	E1a_E4b	NovelJunction	1	104.36	9.33	69.85	9.67	77.60	12.86	9.76
15	ER1c	ExonRegion	0	4.43	1.49	0.46	0.81	12.45	0.37	3.40
16	E1_Ac	KnownBoundary	0	3.69	1.26	0.00	1.35	2.35	0.00	1.42
17	E1_Ad	KnownBoundary	0	11.58	0.00	2.40	1.46	22.08	2.89	9.62
18	ER1d	ExonRegion	0	10.11	1.02	1.25	1.18	17.01	2.26	6.85
19	ER1e	ExonRegion	0	27.95	5.79	28.57	12.51	96.21	4.07	46.73
20	E1_Db	KnownBoundary	0	3.66	1.39	1.44	1.60	0.88	1.66	1.07
21	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E1b_E2c	KnownJunction	1	26.70	11.35	33.35	10.67	54.20	0.00	61.12
23	E1_Dc	KnownBoundary	0	2.02	0.00	0.89	0.00	0.00	1.37	0.87
24	E1c_E2c	KnownJunction	0	0.00	0.00	1.70	0.00	2.10	0.00	0.60
25	ER1f	ExonRegion	0	7.46	0.35	4.16	1.43	3.01	2.45	2.12
26	ER1g	ExonRegion	0	4.48	1.28	2.57	1.50	1.15	1.36	1.63
27	E1d_E2b	KnownJunction	0	1.55	0.00	2.20	0.00	0.00	0.00	0.00
28	E2_Aa	NovelBoundary	0	352.79	247.19	250.17	244.01	237.33	233.67	208.57
29	E2_Ab	NovelBoundary	0	636.59	454.29	405.01	377.95	22.48	423.60	366.10
30	ER2a	ExonRegion	0	2.69	0.00	1.35	0.00	0.00	0.00	0.00
31	ER2b	ExonRegion	0	7.09	0.12	2.64	1.81	3.73	1.59	3.43
32	E2_Ac	KnownBoundary	0	4.64	0.00	5.58	1.68	1.91	1.55	1.93
33	ER2c	ExonRegion	1	61.71	14.80	46.97	15.71	171.63	3.70	80.00
34	E2a_E3a	KnownJunction	1	63.34	12.85	53.26	20.16	156.55	4.77	65.21
35	ER3a	ExonRegion	0	98.18	23.75	72.77	24.12	282.78	10.46	105.97
36	E3a_E4a	KnownJunction	0	18.01	5.96	13.16	7.67	50.79	1.66	34.58
37	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	2.85
38	E3a_E5a	KnownJunction	0	113.63	12.19	59.57	21.37	441.76	14.04	84.08
39	E3a_E6a	KnownJunction	1	3.04	4.10	10.20	3.12	24.80	0.00	26.34
40	E4_Aa	NovelBoundary	0	41.61	21.07	32.86	16.23	10.07	27.04	16.68
41	E4_Ab	NovelBoundary	0	414.21	288.30	289.03	228.81	149.45	170.69	241.66
42	ER4a	ExonRegion	0	16.91	6.61	11.27	6.88	54.07	2.45	29.90
43	ER4b	ExonRegion	0	15.49	5.92	7.96	4.74	62.15	3.89	21.65
44	E4_Da	NovelBoundary	0	12.47	12.64	15.95	10.65	18.51	16.35	13.01
45	E4a_E5a	NovelJunction	0	6.78	2.78	3.19	2.76	17.57	1.50	9.62
46	E4a_E6a	KnownJunction	0	6.41	3.86	6.31	3.71	13.32	1.58	20.59
47	ER5a	ExonRegion	0	134.00	15.57	61.93	29.45	458.34	15.47	92.21
48	E5a_E6a	KnownJunction	0	121.75	22.23	50.27	27.44	402.76	10.93	96.21
49	ER6a	ExonRegion	1	125.35	19.78	70.45	29.16	478.80	7.63	184.06
50	E6a_E7a	KnownJunction	1	115.46	8.28	64.80	19.53	525.40	5.63	206.60
51	ER7a	ExonRegion	0	115.11	15.71	70.23	37.68	413.71	25.09	203.97
52	E7a_E8a	KnownJunction	0	82.65	21.20	63.82	39.66	333.27	29.29	212.22
53	ER8a	ExonRegion	0	85.25	14.41	60.52	23.55	358.73	22.91	158.35
54	E8_Da	KnownBoundary	0	69.76	16.45	55.38	11.68	336.69	16.67	100.19
55	ER8b	ExonRegion	0	103.39	14.32	70.10	16.21	271.76	19.65	129.16
56	E8_Db	KnownBoundary	0	92.83	7.80	51.82	14.30	230.34	13.35	100.71
57	ER8c	ExonRegion	1	34.26	3.31	28.88	2.82	86.64	10.72	52.44
58	E8_Dc	KnownBoundary	0	0.67	0.00	3.02	0.00	3.80	0.00	1.71
59	ER8d	ExonRegion	0	0.23	0.00	1.88	0.00	2.32	0.00	1.18
60	ER8e	ExonRegion	0	0.00	0.00	0.74	0.00	1.10	0.00	0.00