Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RIF1	Gene	0	178.75	102.76	359.28	128.68	219.53	83.82	52.11
2	336130	Transcript	0	78.81	73.90	138.85	56.51	126.98	46.23	24.81
3	359799	Transcript	0	0	0	0	0	0	0	0
4	243326	Transcript	0	44.41	41.56	95.46	51.85	108.37	35.00	18.81
5	ER1a	ExonRegion	0	7.93	11.11	14.49	15.68	13.83	5.17	3.30
6	ER1b	ExonRegion	0	36.97	36.67	51.84	50.87	36.60	16.36	12.09
7	E1_Da	KnownBoundary	1	6.59	29.14	12.75	24.33	2.05	8.79	2.06
8	E1a_E1c	KnownJunction	0	12.72	6.83	7.82	10.10	1.04	4.80	1.12
9	ER1c	ExonRegion	0	13.05	28.33	21.17	31.90	3.89	14.19	2.94
10	E1_Ac	KnownBoundary	0	31.14	38.72	47.84	38.55	4.20	32.32	5.32
11	ER1d	ExonRegion	0	42.41	63.26	84.38	79.90	10.60	35.29	10.99
12	E1b_E2a	KnownJunction	0	66.59	79.52	135.08	121.12	22.50	56.52	15.79
13	ER2a	ExonRegion	0	98.75	92.94	186.55	102.03	77.87	56.01	19.61
14	E2a_E3a	KnownJunction	0	115.83	89.14	207.23	92.52	97.12	52.55	19.71
15	ER3a	ExonRegion	1	171.85	107.10	267.61	125.61	118.04	79.40	20.37
16	E3a_E4a	KnownJunction	1	252.18	133.14	331.41	159.65	167.39	77.42	28.38
17	E4_Aa	NovelBoundary	1	124.59	3.10	154.37	4.47	3.20	7.56	1.43
18	ER4a	ExonRegion	1	353.94	183.84	456.49	205.64	226.62	117.07	39.72
19	E4a_E5a	KnownJunction	1	283.71	170.11	411.38	166.53	189.66	89.54	37.42
20	E4a_E6a	NovelJunction	1	1.87	8.83	0.00	0.00	0.00	1.53	0.60
21	ER5a	ExonRegion	0	243.85	134.84	352.13	165.32	196.89	83.90	36.98
22	E5a_E6a	KnownJunction	0	225.40	125.29	355.98	175.23	182.97	74.34	35.54
23	ER6a	ExonRegion	0	216.57	137.06	383.97	178.38	197.97	77.67	48.72
24	E6a_E7a	KnownJunction	1	235.29	106.48	447.08	169.21	160.77	62.87	34.80
25	E6a_E8a	NovelJunction	0	15.74	23.20	16.73	32.27	2.12	30.34	3.53
26	ER7a	ExonRegion	0	251.88	148.43	469.35	169.22	176.20	70.08	41.66
27	E7a_E8a	KnownJunction	0	245.56	105.87	403.07	140.90	153.90	49.07	40.56
28	ER8a	ExonRegion	0	222.25	136.63	442.03	147.77	171.04	77.26	38.07
29	E8a_E9a	KnownJunction	0	183.99	124.34	418.74	132.58	132.95	64.78	38.19
30	ER9a	ExonRegion	0	166.95	154.12	410.72	152.70	151.10	88.66	58.13
31	E9a_E10a	KnownJunction	0	151.61	145.94	406.03	188.34	115.31	85.89	57.08
32	E9a_E11a	NovelJunction	0	5.89	4.62	4.44	10.89	0.00	2.33	0.00
33	ER10a	ExonRegion	0	160.38	157.51	382.38	175.92	151.76	93.31	61.99
34	E10a_E11a	KnownJunction	0	203.65	144.18	416.08	164.01	196.85	101.52	63.66
35	E11_Aa	NovelBoundary	1	82.08	2.52	162.03	3.06	4.98	0.00	0.00
36	ER11a	ExonRegion	0	130.56	131.29	320.33	158.84	136.85	73.17	55.23
37	E11a_E12a	KnownJunction	0	105.00	116.88	264.28	142.31	135.14	55.29	44.46
38	ER12a	ExonRegion	0	114.97	129.79	326.03	160.21	134.42	71.15	59.52
39	E12a_E13a	KnownJunction	0	99.96	92.50	273.96	105.79	127.99	67.05	39.94
40	ER13a	ExonRegion	0	91.94	100.93	284.49	124.22	115.05	57.14	44.06
41	E13_Da	NovelBoundary	1	31.79	0.00	121.56	1.14	3.30	4.13	0.00
42	E13a_E14a	KnownJunction	0	81.20	105.69	288.84	147.57	109.64	60.22	45.62
43	ER14a	ExonRegion	0	145.68	92.99	389.93	145.85	133.32	74.09	45.79
44	E14a_E15a	KnownJunction	0	200.10	100.44	417.99	146.08	188.60	52.10	51.97
45	E14a_E16a	NovelJunction	0	11.50	8.64	19.51	4.09	0.00	2.68	1.55
46	ER15a	ExonRegion	0	160.36	92.12	375.44	146.51	143.19	73.46	42.69
47	E15a_E16a	KnownJunction	0	129.78	96.26	362.06	157.48	129.28	69.12	34.93
48	ER16a	ExonRegion	0	188.33	121.96	444.59	150.62	158.63	80.78	47.90
49	E16a_E17a	KnownJunction	0	226.68	126.84	457.12	153.61	212.27	106.80	58.07
50	ER17a	ExonRegion	0	176.95	130.65	438.73	161.85	183.72	85.61	66.35
51	E17a_E18a	KnownJunction	0	130.03	132.36	342.68	156.56	181.77	55.10	51.28
52	ER18a	ExonRegion	0	169.47	137.55	437.78	174.06	205.66	85.27	73.44
53	E18a_E19a	KnownJunction	0	176.93	118.64	443.25	149.43	187.67	72.71	52.11
54	ER19a	ExonRegion	0	176.43	101.60	406.82	146.68	152.99	78.90	60.50
55	E19a_E20a	KnownJunction	0	126.08	90.40	346.17	92.03	144.45	62.93	44.81
56	E19a_E21a	NovelJunction	1	6.99	2.86	13.32	9.24	0.88	0.00	0.00
57	ER20a	ExonRegion	0	189.92	97.72	456.22	114.87	187.46	73.11	57.29
58	E20a_E21a	KnownJunction	0	185.17	96.05	385.81	136.92	177.05	57.00	61.27
59	ER21a	ExonRegion	0	198.26	130.78	455.96	168.69	168.15	91.28	66.55
60	E21a_E22a	KnownJunction	0	98.42	80.13	257.21	79.54	130.94	58.42	46.45
61	E21a_E23a	NovelJunction	1	7.64	4.54	15.84	19.37	0.00	13.64	0.00
62	ER22a	ExonRegion	0	95.34	78.46	295.35	78.41	132.72	60.05	54.19
63	E22a_E23a	KnownJunction	0	72.27	54.80	251.81	56.00	133.55	50.41	42.31
64	ER23a	ExonRegion	0	131.67	85.88	340.92	93.02	151.51	63.26	58.28
65	E23a_E24a	KnownJunction	0	189.00	80.81	371.40	80.62	162.52	65.66	55.71
66	ER24a	ExonRegion	0	185.09	92.30	389.75	134.65	155.11	66.46	50.18
67	E24a_E25a	KnownJunction	0	186.39	103.09	392.84	143.69	122.99	58.32	51.11
68	ER25a	ExonRegion	0	238.55	101.77	464.62	152.04	188.87	76.49	54.01
69	E25a_E26a	KnownJunction	0	180.99	84.36	400.54	94.01	176.49	71.39	43.07
70	ER26a	ExonRegion	0	169.09	87.18	381.21	99.63	169.02	75.59	51.70
71	E26a_E27a	KnownJunction	0	183.79	98.23	407.13	117.30	209.16	94.20	66.28
72	ER27a	ExonRegion	0	203.80	123.92	466.32	135.40	216.50	94.16	67.91
73	E27a_E28a	KnownJunction	0	229.20	126.00	407.50	134.18	207.06	74.72	59.17
74	ER28a	ExonRegion	0	256.62	132.62	431.54	166.28	217.28	90.68	56.25
75	E28a_E29a	KnownJunction	0	240.75	124.97	385.56	171.19	250.01	95.11	51.64
76	ER29a	ExonRegion	0	245.70	117.49	466.03	151.16	288.59	102.18	66.87
77	E29a_E30a	KnownJunction	0	184.61	136.90	411.61	201.61	334.08	128.75	71.06
78	ER30a	ExonRegion	0	200.16	151.04	415.08	192.67	348.40	152.42	84.23
79	E30a_E31a	KnownJunction	0	127.71	101.25	296.75	173.44	170.59	132.58	55.02
80	E30a_E32a	KnownJunction	0	78.81	73.90	138.85	56.51	126.98	46.23	24.81
81	ER31a	ExonRegion	0	132.54	106.86	324.43	160.76	195.89	105.34	53.31
82	E31a_E32a	KnownJunction	0	163.41	97.99	368.61	142.53	214.18	119.18	68.38
83	ER32a	ExonRegion	0	200.69	142.20	419.71	189.59	380.64	117.60	71.25
84	E32a_E33a	KnownJunction	0	153.23	118.54	331.39	146.48	254.96	111.76	50.59
85	ER33a	ExonRegion	0	158.36	113.32	361.33	146.45	245.64	105.60	52.89
86	E33a_E34a	KnownJunction	0	110.87	75.98	307.18	108.53	311.21	93.91	42.48
87	ER34a	ExonRegion	0	153.15	91.18	357.87	130.28	238.20	93.51	55.62
88	E34a_E35a	KnownJunction	0	141.98	96.99	369.68	148.27	193.92	99.94	50.70
89	ER35a	ExonRegion	0	193.73	92.82	360.54	105.60	266.23	98.60	48.25
90	E35_Da	KnownBoundary	1	68.40	46.63	142.86	51.91	213.17	41.75	34.62
91	ER35b	ExonRegion	0	75.77	54.79	169.74	71.81	212.85	55.81	34.69
92	IG30	Intergenic	0	16.42	9.94	38.32	13.89	44.33	11.18	8.73
93	IG30_SR1	SilentIntergenicRegion	0	0.00	0.00	0.96	0.00	17.90	0.00	0.00
94	IG30_AR1	ActiveIntergenicRegion	0	0.00	0.00	1.35	0.00	27.53	0.00	0.00
95	IG30_SR2	SilentIntergenicRegion	0	6.89	6.43	26.61	17.05	29.74	8.89	6.47
96	IG30_AR2	ActiveIntergenicRegion	0	23.75	13.72	55.40	18.99	64.86	15.51	12.79
97	IG30_AR3	ActiveIntergenicRegion	0	7.47	12.12	18.35	15.50	12.12	20.32	1.12