Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C2orf29	Gene	0	144.23	104.09	156.16	62.44	254.72	68.74	150.87
2	289382	Transcript	0	192.25	128.66	210.44	75.10	377.73	74.62	208.55
3	IG42_AR8	ActiveIntergenicRegion	0	1.95	4.83	1.67	3.20	0.00	9.59	1.19
4	IG42_SR8	SilentIntergenicRegion	0	5.79	4.25	3.63	3.58	0.42	11.38	1.67
5	IG42_AR9	ActiveIntergenicRegion	0	14.81	5.75	8.02	6.43	1.78	13.62	3.08
6	IG42_AR11	ActiveIntergenicRegion	0	1.53	6.71	1.02	5.00	2.44	12.32	0.34
7	ER1a	ExonRegion	0	22.88	59.15	27.35	30.65	33.13	30.84	35.73
8	E1_Da	NovelBoundary	1	7.63	8.25	4.63	12.65	1.06	28.51	0.64
9	E1a_E2a	KnownJunction	0	59.22	61.40	80.11	17.31	136.54	35.64	80.04
10	E1a_E3a	NovelJunction	0	5.24	9.33	1.34	19.40	1.15	17.23	4.33
11	I1_AR1	ActiveIntronRegion	0	8.31	9.29	8.37	11.23	3.89	14.05	5.26
12	ER2a	ExonRegion	0	83.88	92.96	133.66	34.54	187.15	61.24	129.87
13	E2a_E3a	KnownJunction	0	104.46	126.55	167.66	46.52	223.04	54.40	178.17
14	I2	Intron	1	8.29	7.33	4.79	5.51	3.18	16.82	4.25
15	I2_AR1	ActiveIntronRegion	1	13.13	11.02	9.16	12.13	2.88	38.40	4.21
16	ER3a	ExonRegion	0	158.26	178.90	229.84	83.02	316.70	86.77	245.19
17	E3a_E4a	KnownJunction	0	300.59	203.95	328.02	111.94	632.85	106.69	351.11
18	I3	Intron	0	8.00	6.46	4.35	5.01	0.61	15.50	4.52
19	I3_AR2	ActiveIntronRegion	1	9.98	7.39	5.27	6.09	0.74	18.81	5.14
20	E4_Aa	NovelBoundary	1	5.97	2.73	7.36	17.69	3.25	30.42	4.63
21	ER4a	ExonRegion	0	255.04	200.20	279.89	115.70	419.08	117.04	299.80
22	E4a_E5a	KnownJunction	0	315.62	185.24	299.77	123.64	647.99	116.20	309.66
23	I4	Intron	1	15.34	12.83	8.95	7.18	9.52	25.65	7.40
24	I4_AR1	ActiveIntronRegion	1	16.19	14.15	9.11	7.69	9.85	27.16	7.78
25	E5_Aa	NovelBoundary	0	19.48	13.48	14.26	12.14	10.72	26.16	8.89
26	ER5a	ExonRegion	0	288.81	152.95	286.35	102.58	537.85	97.37	248.35
27	E5_Da	NovelBoundary	1	11.02	10.72	10.49	7.23	7.45	24.79	4.33
28	E5a_E6a	KnownJunction	0	242.97	106.01	243.30	85.50	537.25	66.70	227.65
29	I5	Intron	1	13.17	9.38	10.36	10.13	5.50	32.58	8.07
30	I5_SR1	SilentIntronRegion	1	14.48	5.17	7.63	2.62	4.15	22.46	7.83
31	I5_SR2	SilentIntronRegion	1	9.59	8.58	7.53	7.08	3.65	32.86	5.56
32	I5_AR1	ActiveIntronRegion	1	15.08	10.16	12.17	12.44	6.65	33.23	9.51
33	E6_Aa	NovelBoundary	1	21.46	9.22	12.39	4.33	7.70	31.76	4.07
34	ER6a	ExonRegion	0	246.06	111.80	244.13	80.47	497.23	64.32	225.72
35	E6_Da	NovelBoundary	1	53.84	8.22	27.40	11.73	9.68	34.30	12.87
36	E6a_E7a	KnownJunction	0	264.08	102.64	254.99	83.22	476.04	59.90	232.07
37	E7_Aa	NovelBoundary	1	29.39	12.11	22.32	6.72	10.72	27.12	7.54
38	ER7a	ExonRegion	0	157.35	90.90	160.61	61.20	265.69	72.95	147.75
39	IG43	Intergenic	0	25.77	21.64	20.41	16.70	18.31	51.09	12.47
40	IG43_SR1	SilentIntergenicRegion	0	3.61	2.20	3.81	7.90	1.62	22.79	2.70
41	IG43_AR1	ActiveIntergenicRegion	0	12.46	6.97	9.97	10.83	2.35	37.02	7.18
42	IG43_AR2	ActiveIntergenicRegion	0	5.66	8.38	6.56	10.04	1.41	29.60	9.31
43	IG43_AR3	ActiveIntergenicRegion	0	31.93	26.62	24.89	19.08	24.02	58.10	14.09