Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ANAPC1	Gene	0	94.10	62.55	228.72	110.15	362.72	51.36	125.73
2	341068	Transcript	0	88.32	50.29	215.55	92.50	356.12	41.81	117.30
3	ER1a	ExonRegion	0	14.15	21.25	24.01	26.65	36.91	18.65	22.55
4	E1a_E2a	KnownJunction	0	43.64	26.82	82.54	43.75	126.35	34.54	65.01
5	ER2a	ExonRegion	0	47.10	45.35	133.08	55.32	176.68	21.14	68.67
6	E2_Da	NovelBoundary	0	17.31	18.76	30.95	13.57	30.36	4.31	11.97
7	E2a_E3a	KnownJunction	1	53.52	50.97	182.56	52.53	180.96	17.15	68.98
8	ER3a	ExonRegion	0	73.80	42.16	215.53	57.55	318.66	20.87	111.72
9	E3a_E4a	KnownJunction	0	59.77	28.14	171.44	51.83	285.33	16.37	122.32
10	E3a_E5a	NovelJunction	1	15.47	6.62	53.36	12.52	9.45	1.18	6.82
11	ER4a	ExonRegion	0	58.06	31.63	180.42	47.74	268.20	16.98	125.11
12	E4a_E5a	KnownJunction	0	49.34	26.06	159.28	31.43	269.21	13.45	112.62
13	ER5a	ExonRegion	0	82.34	38.19	224.84	51.47	413.29	19.12	166.53
14	E5a_E6a	KnownJunction	0	107.33	43.74	265.49	74.66	551.17	21.47	188.40
15	ER6a	ExonRegion	0	98.37	38.25	246.88	59.25	319.83	17.62	177.64
16	E6a_E7a	KnownJunction	0	54.49	24.48	170.13	45.38	251.99	25.22	119.57
17	ER7a	ExonRegion	0	67.16	28.37	167.52	40.90	266.09	13.02	122.22
18	E7a_E8a	KnownJunction	1	110.52	25.12	218.93	29.61	317.28	8.58	138.71
19	ER8a	ExonRegion	0	89.91	32.02	214.29	50.40	345.00	13.54	149.04
20	E8a_E9a	KnownJunction	0	53.71	25.12	144.80	37.79	211.39	12.06	110.32
21	ER9a	ExonRegion	0	50.93	32.13	141.02	45.57	234.07	13.56	113.98
22	E9a_E10a	KnownJunction	0	37.22	26.01	120.77	43.10	195.83	10.18	86.60
23	ER10a	ExonRegion	0	47.22	26.66	144.23	37.23	187.06	12.73	94.11
24	E10a_E11a	KnownJunction	0	52.71	26.01	136.17	23.62	210.91	9.59	90.17
25	ER11a	ExonRegion	0	62.02	24.17	149.77	32.99	246.87	10.43	97.08
26	E11a_E12a	KnownJunction	0	79.56	19.76	171.68	33.19	244.73	18.44	101.09
27	ER12a	ExonRegion	0	67.49	31.41	173.85	42.29	251.16	12.50	115.98
28	E12a_E13a	KnownJunction	1	52.47	35.76	129.20	48.30	200.79	5.55	101.78
29	ER13a	ExonRegion	1	56.35	36.17	140.20	48.99	231.68	11.35	101.60
30	E13a_E14a	KnownJunction	0	48.73	27.43	147.60	45.76	253.63	13.69	91.16
31	ER14a	ExonRegion	0	47.94	25.26	147.10	40.43	274.67	11.51	101.69
32	E14a_E15a	KnownJunction	0	36.28	21.67	124.38	35.27	218.40	12.86	81.76
33	ER15a	ExonRegion	0	46.94	20.45	152.21	42.43	251.16	15.39	106.15
34	E15a_E16a	KnownJunction	1	31.34	21.62	146.72	40.37	259.90	6.94	97.90
35	ER16a	ExonRegion	0	44.78	18.38	189.98	48.22	328.45	21.83	120.80
36	E16a_E17a	KnownJunction	1	46.83	15.45	195.01	46.92	291.11	34.25	127.01
37	ER17a	ExonRegion	0	100.36	21.58	232.32	50.61	396.45	21.00	129.81
38	E17a_E18a	KnownJunction	0	126.14	27.37	285.83	60.93	542.18	16.75	153.50
39	ER18a	ExonRegion	1	162.53	37.89	401.36	97.58	504.38	17.34	158.62
40	E18a_E19a	KnownJunction	1	140.86	46.79	475.64	130.63	475.00	31.03	125.53
41	ER19a	ExonRegion	1	99.13	35.69	381.87	135.01	365.07	36.07	127.42
42	E19a_E20a	KnownJunction	0	87.94	17.86	220.74	61.61	337.45	25.35	135.04
43	E19a_E21a	NovelJunction	1	20.93	15.18	176.57	120.83	0.00	15.49	16.40
44	ER20a	ExonRegion	0	98.07	20.14	232.79	58.80	492.59	32.42	154.00
45	E20a_E21a	KnownJunction	1	134.07	19.41	272.32	78.00	695.00	39.18	168.16
46	ER21a	ExonRegion	1	126.35	42.84	433.14	153.33	410.72	46.25	163.76
47	E21a_E22a	KnownJunction	1	118.28	31.79	392.12	159.54	347.13	30.28	145.36
48	ER22a	ExonRegion	1	156.71	48.78	609.19	198.63	603.32	48.33	208.90
49	E22a_E23a	KnownJunction	1	82.88	21.31	367.21	118.98	291.73	26.10	94.36
50	ER23a	ExonRegion	1	89.95	41.40	426.88	159.54	354.65	45.26	117.96
51	E23a_E24a	KnownJunction	1	92.16	38.22	367.68	145.61	373.23	41.33	94.14
52	E23a_E25a	NovelJunction	0	2.72	0.00	12.46	8.21	0.00	1.66	0.66
53	ER24a	ExonRegion	1	95.90	39.39	415.96	145.32	343.63	37.80	130.82
54	E24a_E25a	KnownJunction	1	73.52	32.16	354.52	118.52	316.70	29.88	114.44
55	ER25a	ExonRegion	0	138.89	151.51	369.03	222.21	514.59	117.50	182.33
56	E25a_E26a	KnownJunction	0	179.22	175.02	265.31	195.44	677.08	136.06	210.39
57	E26_Aa	NovelBoundary	0	19.76	17.58	39.96	18.96	18.63	11.79	10.83
58	ER26a	ExonRegion	0	238.64	231.74	460.94	359.98	824.59	186.13	290.28
59	E26a_E27a	KnownJunction	0	230.84	221.28	476.32	418.80	957.96	233.45	277.94
60	E27_Aa	NovelBoundary	1	103.36	1.18	212.91	1.44	0.97	1.29	3.86
61	ER27a	ExonRegion	0	251.09	249.14	493.18	410.69	840.80	216.09	280.84
62	E27a_E28a	KnownJunction	0	197.73	190.34	427.56	339.53	688.68	188.30	259.56
63	I27_AR1	ActiveIntronRegion	0	21.37	7.15	31.00	7.56	16.55	5.53	7.66
64	E28_Aa	NovelBoundary	0	11.17	14.03	30.64	7.07	11.78	16.13	12.96
65	ER28a	ExonRegion	0	194.13	204.85	445.27	337.66	750.77	189.51	250.19
66	E28a_E29a	KnownJunction	0	181.82	239.62	350.03	377.38	655.35	173.66	217.44
67	ER29a	ExonRegion	0	209.10	210.63	457.97	359.66	751.61	191.65	251.30
68	E29a_E30a	KnownJunction	0	136.69	160.62	344.07	308.43	591.17	146.89	172.24
69	E29a_E31a	NovelJunction	1	10.95	9.09	40.42	17.12	4.10	11.07	0.00
70	ER30a	ExonRegion	0	131.96	176.17	304.62	302.84	567.36	155.93	181.04
71	E30_Da	NovelBoundary	1	31.46	25.64	42.49	54.94	3.97	34.63	7.71
72	E30a_E31a	KnownJunction	0	118.16	161.60	263.62	256.23	483.28	160.02	177.04
73	I30_SR1	SilentIntronRegion	1	23.10	18.28	48.25	34.49	6.20	20.78	3.56
74	I30_AR1	ActiveIntronRegion	0	25.73	10.82	44.63	11.27	3.52	10.07	3.92
75	ER31a	ExonRegion	0	178.15	200.66	395.51	297.54	655.19	178.94	200.86
76	E31_Da	NovelBoundary	1	30.54	13.16	60.53	26.93	3.94	19.32	3.12
77	E31a_E32a	KnownJunction	0	189.05	191.47	374.05	259.02	761.04	190.73	192.77
78	E32_Aa	NovelBoundary	1	57.58	13.21	86.68	11.38	8.35	22.89	4.73
79	ER32a	ExonRegion	0	165.56	126.95	362.34	198.49	658.92	120.93	153.94
80	E32_Da	NovelBoundary	1	57.26	22.62	81.49	18.61	25.68	7.75	6.72
81	E32a_E33a	KnownJunction	0	121.04	31.55	229.58	62.82	495.61	27.31	97.53
82	I32	Intron	1	22.96	14.61	48.64	13.00	16.65	10.57	4.76
83	I32_SR1	SilentIntronRegion	1	23.19	14.77	49.15	13.12	16.82	10.71	4.81
84	ER33a	ExonRegion	0	136.02	25.59	251.96	55.62	551.27	27.47	131.26
85	E33a_E34a	KnownJunction	1	127.33	13.37	245.37	51.45	507.21	30.77	148.53
86	ER34a	ExonRegion	0	151.87	26.52	293.16	54.35	584.66	21.15	136.29
87	E34a_E35a	KnownJunction	0	177.73	27.80	310.01	49.20	582.82	13.59	121.17
88	ER35a	ExonRegion	0	153.63	26.92	270.91	46.19	621.53	15.05	138.48
89	E35a_E36a	KnownJunction	0	112.81	22.78	215.61	45.97	638.59	12.14	145.68
90	ER36a	ExonRegion	0	112.47	24.63	226.38	51.14	487.95	16.77	131.18
91	E36a_E37a	KnownJunction	0	119.80	19.23	203.66	54.89	493.03	18.65	126.59
92	ER37a	ExonRegion	0	122.00	28.05	247.76	54.31	529.57	19.93	141.01
93	E37a_E38a	KnownJunction	0	100.62	28.87	201.90	52.56	636.24	18.65	123.45
94	ER38a	ExonRegion	0	130.48	40.07	227.65	70.54	558.80	28.31	166.11
95	E38a_E39a	KnownJunction	0	162.49	36.67	235.34	54.21	620.67	29.99	194.33
96	ER39a	ExonRegion	0	116.96	23.01	181.06	46.05	456.44	23.96	126.60
97	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
98	ER40a	ExonRegion	0	40.94	9.94	74.79	23.83	195.13	5.08	63.58
99	E40a_E41a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
100	ER41a	ExonRegion	0	5.05	0.00	10.45	1.90	80.51	0.00	13.20
101	E41a_E42a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
102	ER42a	ExonRegion	0	0.77	0.00	0.00	0.00	0.49	0.00	0.00
103	E42a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
104	ER43a	ExonRegion	0	14.42	0.00	20.03	2.47	59.68	0.34	12.87
105	E43a_E44a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
106	ER44a	ExonRegion	0	7.15	6.56	13.49	9.39	0.68	6.19	7.37
107	E44a_E45a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
108	ER45a	ExonRegion	0	30.53	8.44	55.61	17.02	118.51	9.32	34.07
109	E45a_E46a	KnownJunction	0	0.00	0.00	0.00	0.00	1.13	0.00	0.00
110	ER46a	ExonRegion	0	3.31	1.39	10.26	3.06	9.62	2.81	6.00
111	E46a_E47a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
112	ER47a	ExonRegion	0	11.67	3.01	21.31	5.30	94.34	1.13	19.50
113	E47a_E48a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
114	ER48a	ExonRegion	0	33.71	22.54	59.66	47.74	60.36	22.96	40.02
115	IG11_AR26	ActiveIntergenicRegion	0	15.20	2.26	32.60	8.77	45.77	3.87	9.22