Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AFF3	Gene	0	25.07	3.78	7.78	3.01	6.14	10.10	0.24
2	317233	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	409579	Transcript	0	0.00	0.01	0.00	0.00	0.00	0.00	0.00
4	356421	Transcript	0	0	0	0	0	0	0	0
5	409236	Transcript	0	1.38	1.95	0.00	0.00	0.00	0.87	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	0.00	0.03	0.00	0.00	0.00	0.00	0.00
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	0.00	2.25	0.00	0.00	0.00	0.00	0.00
11	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	1.44	0.00	0.00	0.00
12	ER4a	ExonRegion	0	0.28	1.21	0.00	0.00	0.00	0.08	0.00
13	E4a_E5a	KnownJunction	0	2.49	2.68	0.00	0.00	0.00	1.66	0.00
14	E5_Aa	NovelBoundary	0	0.00	11.35	0.00	2.87	0.00	25.43	0.00
15	ER5a	ExonRegion	0	2.39	12.09	3.76	0.81	1.70	21.12	0.00
16	E5_Da	NovelBoundary	0	0.00	9.22	0.00	3.33	0.00	33.71	0.00
17	E5a_E6a	KnownJunction	0	3.74	0.00	0.00	0.00	0.00	0.00	0.00
18	E5a_E7a	KnownJunction	0	3.37	11.38	0.00	0.00	2.10	20.13	0.00
19	I5_AR1	ActiveIntronRegion	0	0.48	7.82	1.74	0.23	0.00	6.09	0.00
20	ER6a	ExonRegion	0	2.09	1.51	0.00	0.00	0.16	0.44	0.00
21	E6a_E7a	KnownJunction	0	1.60	1.37	0.00	0.00	1.04	1.53	0.00
22	ER7a	ExonRegion	0	15.95	14.28	0.59	0.85	1.69	16.55	0.00
23	E7a_E8a	KnownJunction	0	22.03	8.49	1.54	0.00	0.90	23.56	0.00
24	ER8a	ExonRegion	0	18.90	11.21	1.41	1.63	1.16	12.98	0.00
25	E8a_E9a	KnownJunction	0	19.44	10.85	0.00	1.68	3.76	9.09	0.00
26	ER9a	ExonRegion	0	19.28	10.10	0.33	1.40	1.23	9.53	0.00
27	E9_Da	NovelBoundary	0	4.32	7.51	0.00	0.00	0.00	1.37	0.00
28	E9a_E10a	KnownJunction	0	16.67	6.96	1.48	1.25	1.18	7.61	0.00
29	ER10a	ExonRegion	0	33.68	4.02	1.55	1.87	1.15	11.95	0.00
30	E10a_E11a	KnownJunction	0	42.24	2.86	1.54	1.49	1.01	14.34	0.00
31	ER11a	ExonRegion	0	36.14	4.11	1.01	1.00	2.09	9.76	0.00
32	E11a_E12a	KnownJunction	0	10.51	3.05	0.89	0.00	3.34	5.92	0.00
33	ER12a	ExonRegion	0	26.27	2.82	1.28	0.00	1.64	14.91	0.00
34	E12a_E13a	KnownJunction	0	31.33	1.50	0.89	0.00	1.94	18.41	0.00
35	ER13a	ExonRegion	0	29.72	5.75	0.82	0.43	1.25	13.04	0.00
36	E13a_E14a	KnownJunction	0	13.32	9.14	0.78	1.33	0.00	4.66	0.00
37	ER14a	ExonRegion	0	16.77	7.03	1.63	3.64	0.33	8.68	0.00
38	E14a_E15a	KnownJunction	0	10.80	1.47	3.61	5.36	1.08	13.37	0.00
39	ER15a	ExonRegion	0	11.49	3.64	3.29	2.55	3.24	8.55	0.00
40	E15a_E16a	KnownJunction	0	11.60	5.54	2.49	2.47	3.25	1.66	0.00
41	I15_AR3	ActiveIntronRegion	0	12.69	0.00	3.15	0.00	0.00	0.00	0.00
42	ER16a	ExonRegion	0	5.48	3.88	1.92	4.35	1.18	8.56	0.00
43	E16a_E17a	KnownJunction	0	9.73	2.36	3.78	2.44	0.00	8.82	0.00
44	ER17a	ExonRegion	0	8.51	2.06	3.86	3.44	0.59	8.66	0.14
45	E17a_E18a	KnownJunction	0	18.98	1.63	7.52	0.00	0.00	6.03	0.00
46	ER18a	ExonRegion	0	31.06	3.00	8.54	8.08	1.86	8.81	0.00
47	E18a_E19a	KnownJunction	0	33.51	1.58	9.43	7.34	6.18	8.17	0.00
48	ER19a	ExonRegion	0	37.88	3.45	12.25	8.49	2.05	13.65	0.25
49	E19a_E20a	KnownJunction	0	43.93	2.15	11.86	10.05	5.35	18.55	0.00
50	ER20a	ExonRegion	0	27.25	1.35	10.39	7.20	3.08	15.40	0.00
51	E20a_E21a	KnownJunction	0	31.58	0.00	9.79	7.96	5.12	18.25	0.00
52	ER21a	ExonRegion	0	29.82	0.34	9.60	7.54	2.78	19.75	0.00
53	E21a_E22a	KnownJunction	0	21.83	1.16	8.03	8.56	1.18	17.34	0.00
54	ER22a	ExonRegion	0	33.36	5.05	13.93	3.70	2.84	15.74	0.00
55	E22a_E23a	KnownJunction	0	32.70	2.31	16.86	2.87	4.54	19.99	0.00
56	ER23a	ExonRegion	0	26.01	5.96	11.84	4.17	2.71	16.02	0.59
57	E23a_E24a	KnownJunction	0	21.18	4.54	7.98	5.50	3.11	13.29	0.63
58	E24_Aa	NovelBoundary	0	10.83	0.00	0.00	0.00	0.00	0.00	0.00
59	ER24a	ExonRegion	0	23.60	1.81	9.40	3.70	1.53	12.03	0.09
60	E24_Da	NovelBoundary	0	15.14	0.00	1.49	0.00	0.00	0.00	0.00
61	E24a_E25a	KnownJunction	0	21.68	4.49	10.38	3.03	2.28	19.38	0.00
62	ER25a	ExonRegion	0	17.40	1.82	7.17	2.79	1.55	14.76	0.61
63	E25a_E26a	KnownJunction	0	14.44	1.08	4.71	3.36	0.00	7.80	0.87
64	ER26a	ExonRegion	0	11.91	1.78	3.12	2.91	0.73	8.51	0.09
65	E26a_E27a	KnownJunction	0	10.41	2.52	8.49	0.00	1.87	9.70	0.00
66	ER27a	ExonRegion	0	14.86	1.58	8.32	1.44	2.25	6.36	0.00
67	E27_Da	KnownBoundary	0	21.46	3.02	10.00	1.68	6.55	6.30	0.00
68	ER27b	ExonRegion	0	19.63	2.36	6.21	4.87	3.36	9.88	0.00
69	E27_Db	KnownBoundary	0	23.05	4.89	4.73	4.31	3.41	16.03	0.00
70	ER27c	ExonRegion	0	35.60	3.17	11.70	2.92	11.68	10.26	0.44
71	IG33_SR3	SilentIntergenicRegion	0	9.76	0.00	1.27	0.01	1.11	3.15	0.00