Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C2orf49	Gene	0	49.28	46.45	84.44	48.35	71.93	36.37	47.39
2	410049	Transcript	1	8.82	22.95	15.86	15.50	8.61	38.93	25.14
3	258457	Transcript	0	73.44	68.32	119.60	61.97	80.86	46.47	59.08
4	IG17	Intergenic	0	3.66	5.20	11.35	9.17	6.79	3.45	2.39
5	IG17_AR5	ActiveIntergenicRegion	0	7.64	10.05	23.70	17.85	13.68	6.35	5.08
6	ER1a	ExonRegion	0	0.70	2.22	3.15	1.84	0.00	2.72	4.43
7	ER1b	ExonRegion	0	29.90	58.11	40.83	62.95	57.12	53.46	58.98
8	E1a_E2a	KnownJunction	0	6.96	47.39	13.49	32.59	7.15	44.01	13.83
9	I1	Intron	1	4.51	6.00	12.73	10.96	0.35	2.54	1.43
10	I1_AR1	ActiveIntronRegion	1	2.43	4.68	8.98	11.03	0.49	1.95	0.91
11	I1_SR1	SilentIntronRegion	1	5.77	3.97	11.78	10.88	0.20	0.87	0.49
12	I1_AR2	ActiveIntronRegion	1	6.42	7.47	14.31	13.77	0.07	3.48	1.56
13	E2_Aa	NovelBoundary	0	4.64	7.25	16.68	13.57	0.00	2.79	1.13
14	ER2a	ExonRegion	0	70.13	136.01	114.39	101.99	84.31	111.32	112.01
15	E2_Da	NovelBoundary	1	3.00	4.36	51.24	15.23	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	96.55	148.49	142.32	93.60	217.46	128.16	119.04
17	I2	Intron	1	2.84	4.22	26.88	11.36	0.81	1.58	1.83
18	I2_SR1	SilentIntronRegion	1	2.85	4.22	26.92	11.38	0.82	1.59	1.83
19	E3_Aa	NovelBoundary	1	3.81	5.54	27.17	8.02	1.18	3.32	0.67
20	ER3a	ExonRegion	0	85.45	145.56	158.79	118.96	118.65	143.41	140.13
21	E3_Da	KnownBoundary	0	110.49	85.86	164.78	79.92	75.47	73.11	89.80
22	E3a_E3b	KnownJunction	1	16.94	43.69	28.57	29.15	17.22	75.15	45.85
23	ER3b	ExonRegion	0	103.42	103.66	164.00	84.71	93.19	70.13	82.11
24	E3_Ab	KnownBoundary	0	65.37	119.77	122.22	94.74	63.16	84.18	84.77
25	ER3c	ExonRegion	0	82.29	113.51	124.71	103.49	106.46	102.26	104.03
26	E3_Db	NovelBoundary	1	4.61	1.58	23.67	13.46	0.00	2.09	4.64
27	E3b_E4a	KnownJunction	0	95.22	99.65	130.66	79.54	184.51	134.62	110.27
28	I3	Intron	1	3.73	4.00	18.19	8.92	0.91	1.07	1.26
29	I3_SR1	SilentIntronRegion	1	3.74	4.00	18.22	8.94	0.92	1.07	1.26
30	E4_Aa	NovelBoundary	1	13.62	8.28	45.01	10.84	4.03	1.10	2.62
31	ER4a	ExonRegion	0	60.35	43.60	110.79	43.90	70.05	47.11	52.80
32	E4_Da	KnownBoundary	0	45.15	33.57	64.21	31.70	55.33	25.97	23.66
33	ER4b	ExonRegion	0	43.47	32.97	75.20	39.24	68.53	22.81	36.04
34	IG18	Intergenic	0	8.15	12.12	46.08	23.62	2.04	4.89	19.92
35	IG18_AR1	ActiveIntergenicRegion	0	3.57	7.58	30.80	7.79	1.70	4.22	4.76
36	IG18_SR1	SilentIntergenicRegion	0	2.96	6.20	24.77	13.77	1.22	2.24	6.21
37	IG18_AR2	ActiveIntergenicRegion	0	9.80	18.24	56.80	30.65	1.80	6.06	35.40
38	IG18_SR2	SilentIntergenicRegion	0	3.46	6.68	23.96	6.11	0.00	0.00	4.64
39	IG18_AR3	ActiveIntergenicRegion	0	22.66	24.57	103.29	56.92	4.62	11.57	41.23
40	IG18_SR3	SilentIntergenicRegion	0	7.63	6.17	34.72	17.38	2.38	3.13	16.11