Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC133644.3	Gene	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
2	331944	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	Ix	Intron	0	10.97	26.73	16.31	25.74	0.31	14.81	2.41
6	Ix_AR1	ActiveIntronRegion	0	2.37	15.86	3.18	12.42	0.00	10.94	0.74
7	Ix_SR1	SilentIntronRegion	0	1.56	16.04	3.87	9.56	0.00	3.41	0.41
8	Ix_SR2	SilentIntronRegion	0	2.88	20.29	7.09	13.88	0.09	6.81	1.62
9	Ix_AR4	ActiveIntronRegion	0	3.04	21.31	6.05	16.09	0.00	8.80	1.88
10	Ix_SR3	SilentIntronRegion	0	2.22	31.77	7.24	15.91	0.00	8.76	2.43
11	Ix_AR5	ActiveIntronRegion	0	6.28	21.76	12.34	19.87	0.17	9.06	2.89
12	Ix_SR4	SilentIntronRegion	0	2.31	11.28	7.74	15.68	0.00	5.60	2.70
13	Ix_SR5	SilentIntronRegion	0	4.82	17.16	15.15	15.70	0.00	6.94	2.64
14	Ix_AR7	ActiveIntronRegion	0	2.39	12.54	7.04	9.97	0.21	8.27	0.45
15	Ix_SR6	SilentIntronRegion	0	6.06	18.77	11.54	14.46	0.12	4.01	1.47
16	Ix_AR8	ActiveIntronRegion	0	21.76	29.89	23.82	18.60	0.64	10.72	2.97
17	Ix_SR7	SilentIntronRegion	0	7.90	25.46	14.32	19.09	0.27	5.96	3.16
18	Ix_AR9	ActiveIntronRegion	0	6.36	25.42	11.00	24.36	0.17	4.37	1.95
19	Ix_AR10	ActiveIntronRegion	0	8.23	44.83	19.42	29.16	0.46	14.13	2.73
20	Ix_SR8	SilentIntronRegion	0	9.44	52.07	23.90	29.04	0.81	16.11	3.47
21	Ix_AR11	ActiveIntronRegion	0	9.35	52.85	26.31	32.21	0.81	17.16	3.71
22	Ix_AR12	ActiveIntronRegion	0	9.44	55.02	24.92	31.89	0.81	16.55	3.18
23	Ix_SR9	SilentIntronRegion	0	7.89	30.32	20.56	24.66	0.46	8.85	2.74
24	Ix_AR14	ActiveIntronRegion	0	13.71	29.89	19.68	38.98	0.30	25.11	1.45
25	Ix_SR11	SilentIntronRegion	0	10.84	25.93	16.49	19.72	0.34	7.71	3.35
26	Ix_SR12	SilentIntronRegion	0	17.73	23.65	25.94	18.19	0.24	8.56	2.49
27	Ix_AR15	ActiveIntronRegion	0	1.49	12.96	3.89	10.27	0.00	3.12	0.84
28	Ix_SR13	SilentIntronRegion	0	3.20	14.08	7.34	13.31	0.00	4.78	0.94
29	Ix_AR16	ActiveIntronRegion	0	4.66	28.96	12.41	23.77	0.00	6.32	1.30
30	Ix_SR14	SilentIntronRegion	0	6.08	16.97	9.34	13.94	0.17	5.19	1.19
31	Ix_AR17	ActiveIntronRegion	0	5.17	15.95	8.06	12.50	0.50	3.09	0.35
32	Ix_AR18	ActiveIntronRegion	0	6.46	37.47	10.67	28.21	0.56	8.92	3.40
33	Ix_SR16	SilentIntronRegion	0	11.32	31.91	20.12	27.57	0.56	12.14	2.87
34	Ix_AR19	ActiveIntronRegion	0	13.03	32.29	17.20	28.42	1.50	14.38	3.73
35	Ix_SR18	SilentIntronRegion	0	11.15	32.11	16.83	33.94	0.49	15.88	4.16
36	Ix_AR21	ActiveIntronRegion	0	24.60	153.54	63.44	269.00	3.20	198.09	11.01
37	Ix_SR19	SilentIntronRegion	0	16.20	56.73	25.58	60.36	0.28	39.72	3.18
38	Ix_AR25	ActiveIntronRegion	0	19.24	34.68	22.04	33.92	0.52	26.59	5.15
39	Ix_AR26	ActiveIntronRegion	0	26.69	45.94	29.80	41.04	1.25	25.30	7.11
40	Ix_SR21	SilentIntronRegion	0	18.56	37.42	20.93	40.07	0.69	21.72	2.09
41	Ix_AR27	ActiveIntronRegion	0	13.49	36.50	15.65	36.58	0.20	24.29	1.12
42	Ix_SR22	SilentIntronRegion	0	10.50	23.28	15.57	17.89	0.59	12.06	1.52
43	Ix_AR28	ActiveIntronRegion	0	9.72	37.46	19.48	33.35	0.31	26.38	2.49
44	Ix_AR29	ActiveIntronRegion	0	16.26	39.83	20.04	47.77	0.66	33.02	2.33
45	Ix_SR23	SilentIntronRegion	0	22.82	46.98	29.40	50.98	0.83	33.56	4.44
46	Ix_AR31	ActiveIntronRegion	0	13.78	28.37	19.09	38.79	0.28	21.29	3.27
47	Ix_SR24	SilentIntronRegion	0	4.97	24.77	6.02	31.25	0.17	27.16	2.03
48	Ix_AR33	ActiveIntronRegion	0	6.24	12.98	4.29	18.69	0.00	12.43	0.94
49	Ix_SR26	SilentIntronRegion	0	31.70	37.77	34.02	43.83	0.94	23.20	3.46
50	Ix_AR34	ActiveIntronRegion	0	16.81	20.01	24.23	28.66	0.35	19.57	1.64
51	Ix_AR35	ActiveIntronRegion	0	14.92	15.69	15.89	17.04	0.00	13.23	1.35
52	Ix_SR27	SilentIntronRegion	0	8.28	22.52	12.22	20.51	0.00	21.41	0.71
53	Ix_AR36	ActiveIntronRegion	0	10.76	34.32	16.93	28.68	0.00	29.73	0.00
54	Ix_AR37	ActiveIntronRegion	0	33.84	26.62	45.60	30.78	0.07	25.34	4.65
55	Ix_SR28	SilentIntronRegion	0	16.66	21.91	28.89	22.96	0.23	13.17	4.67
56	Ix_AR38	ActiveIntronRegion	0	13.97	27.85	23.08	26.43	0.26	19.44	2.32
57	Ix_SR29	SilentIntronRegion	0	17.11	30.81	25.81	28.45	0.17	21.03	1.89
58	Ix_SR30	SilentIntronRegion	0	6.75	16.62	10.58	14.68	0.21	7.97	1.84
59	Ix_AR40	ActiveIntronRegion	0	20.94	45.37	36.78	38.09	0.95	19.24	2.11
60	Ix_SR31	SilentIntronRegion	0	9.83	10.49	12.50	9.20	0.14	6.33	1.24
61	Ix_AR41	ActiveIntronRegion	0	5.60	17.01	9.68	9.09	0.00	8.06	2.02
62	Ix_SR32	SilentIntronRegion	0	6.15	16.17	10.11	5.56	0.00	6.13	2.02
63	Ix_AR42	ActiveIntronRegion	0	15.65	31.32	20.66	23.34	0.00	16.56	3.05
64	Ix_SR33	SilentIntronRegion	0	6.02	21.64	12.00	17.44	0.24	10.00	2.31
65	Ix_AR43	ActiveIntronRegion	0	7.55	27.07	11.10	22.85	0.21	10.97	3.79
66	Ix_AR44	ActiveIntronRegion	0	16.20	37.43	31.64	33.20	1.40	28.66	1.84
67	Ix_SR34	SilentIntronRegion	0	9.01	38.14	20.21	32.71	0.44	20.26	1.37
68	Ix_AR45	ActiveIntronRegion	0	14.53	51.63	20.36	40.09	0.60	22.43	3.87
69	Ix_SR35	SilentIntronRegion	0	4.20	14.23	6.19	13.14	0.13	5.68	1.14
70	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00