Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF103	Gene	0	210.20	191.60	201.89	174.19	49.91	252.08	309.40
2	409384	Transcript	0	39.24	40.36	31.05	39.52	4.06	46.70	14.69
3	237455	Transcript	1	288.75	278.87	252.73	328.81	34.72	439.34	119.47
4	409225	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	409810	Transcript	0	0	0	0	0	0	0	0
6	263856	Transcript	0	0	0	0	0	0	0	0
7	393773	Transcript	0	0	0	0	0	0	0	0
8	409727	Transcript	0	220.22	0.00	133.31	0.00	0.00	0.00	0.00
9	ER1a	ExonRegion	0	1.77	12.23	0.35	5.34	0.86	3.25	1.05
10	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	1	46.05	100.66	39.67	111.77	4.08	142.58	22.38
12	E2a_E3b	KnownJunction	1	298.83	249.16	221.72	297.16	27.50	349.09	115.71
13	I2	Intron	1	47.06	20.56	58.95	27.73	0.90	11.46	2.01
14	I2_SR1	SilentIntronRegion	1	61.47	21.92	58.42	37.42	0.57	14.53	2.72
15	I2_AR1	ActiveIntronRegion	1	38.22	23.24	54.45	28.85	0.87	10.84	1.47
16	I2_SR2	SilentIntronRegion	1	33.18	17.54	49.88	26.21	0.78	8.98	2.70
17	I2_AR2	ActiveIntronRegion	1	52.15	18.89	68.92	20.30	1.26	11.14	1.60
18	E3_Ab	NovelBoundary	1	155.40	4.23	119.62	16.17	0.00	4.48	0.00
19	ER3a	ExonRegion	1	153.69	147.00	117.53	152.75	15.39	181.45	55.99
20	ER3b	ExonRegion	1	484.61	443.31	361.80	517.85	46.90	671.62	126.22
21	E3_Da	NovelBoundary	1	180.38	96.76	107.73	109.77	7.86	64.99	9.54
22	E3a_E4a	KnownJunction	1	394.80	356.58	317.35	488.29	29.92	682.75	139.93
23	E3a_E5a	NovelJunction	1	14.54	14.76	24.47	34.62	0.00	24.28	0.82
24	E3a_E7a	KnownJunction	0	1.52	2.23	6.31	0.00	0.00	2.09	1.71
25	I3	Intron	1	48.17	30.41	46.33	24.16	2.47	17.97	7.47
26	I3_SR1	SilentIntronRegion	1	59.22	39.04	60.46	22.71	1.44	14.23	5.74
27	I3_AR1	ActiveIntronRegion	1	41.42	25.17	54.75	19.47	1.70	10.82	3.86
28	I3_SR2	SilentIntronRegion	1	69.36	33.41	72.93	27.70	2.41	15.07	5.80
29	I3_AR2	ActiveIntronRegion	1	71.01	39.95	65.70	35.55	2.94	26.57	9.02
30	ER4a	ExonRegion	1	411.72	336.19	338.56	399.22	48.96	548.62	141.97
31	E4a_E5a	KnownJunction	1	300.39	325.58	280.08	319.16	57.47	395.86	150.44
32	ER5a	ExonRegion	1	280.71	305.06	318.98	357.28	40.40	517.15	146.37
33	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER6b	ExonRegion	0	26.47	13.61	13.15	8.73	10.02	15.95	38.33
35	E6_Ac	KnownBoundary	1	99.49	57.40	57.74	34.13	59.45	65.98	192.56
36	ER6c	ExonRegion	1	165.31	118.40	96.00	44.05	83.98	92.35	404.93
37	E6a_E7a	KnownJunction	1	146.55	136.14	90.48	37.11	60.58	96.59	460.51
38	E6a_E8a	KnownJunction	0	17.16	8.56	7.95	4.25	1.08	9.09	11.31
39	ER7a	ExonRegion	1	103.84	155.96	76.64	51.29	35.67	105.86	358.97
40	E7a_E8a	KnownJunction	1	120.05	186.11	70.57	60.87	40.20	104.60	325.14
41	ER8a	ExonRegion	1	391.43	296.69	198.05	104.98	124.72	189.44	701.69
42	E8_Da	KnownBoundary	1	341.19	291.51	199.66	103.79	214.46	199.66	759.34
43	E8a_E9c	KnownJunction	0	220.22	0.00	133.31	0.00	0.00	0.00	0.00
44	ER8b	ExonRegion	1	404.53	343.87	237.25	127.56	204.56	223.16	817.33
45	E8_Db	KnownBoundary	1	316.57	294.50	183.19	115.92	166.44	175.32	562.54
46	ER8c	ExonRegion	1	341.54	305.67	204.47	120.77	133.23	200.47	657.85
47	E8c_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E8c_E9b	KnownJunction	1	350.31	277.53	207.02	116.57	97.63	207.70	599.98
49	ER9a	ExonRegion	1	167.13	143.35	98.22	60.48	49.00	97.47	300.87
50	ER9b	ExonRegion	1	432.92	309.35	240.54	118.99	108.76	197.04	661.78
51	E9_Ac	KnownBoundary	1	554.11	328.05	297.47	118.50	152.33	196.28	703.23
52	ER9c	ExonRegion	1	543.94	325.96	317.65	120.36	163.83	202.67	761.61
53	E9a_E10a	KnownJunction	1	497.19	319.41	312.71	133.72	201.48	175.81	738.30
54	ER10a	ExonRegion	1	477.04	279.54	319.75	115.69	181.10	176.59	686.37
55	E10a_E11a	KnownJunction	1	472.18	241.78	288.89	84.55	113.72	151.31	509.20
56	ER11a	ExonRegion	1	270.77	191.20	231.45	75.34	76.44	119.50	495.32
57	E11_Da	KnownBoundary	1	179.22	118.01	217.54	35.25	46.29	66.70	462.32
58	ER11b	ExonRegion	1	156.19	147.31	182.42	67.69	63.76	100.89	607.78
59	E11_Db	KnownBoundary	0	58.97	71.30	92.80	75.34	13.26	64.27	102.13
60	ER11c	ExonRegion	1	185.48	76.28	166.47	47.07	63.97	81.41	535.34
61	ER11d	ExonRegion	0	1.54	0.00	1.35	0.00	0.00	0.00	0.67
62	IG44_AR5	ActiveIntergenicRegion	0	14.65	8.48	15.99	7.24	14.11	13.02	7.41
63	IG44_AR3	ActiveIntergenicRegion	0	0.98	3.98	0.82	8.34	1.48	1.27	1.12