Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HAAO	Gene	0	2.17	0.88	3.35	0.84	5.71	5.17	0.21
2	406924	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.23	0.17
3	294973	Transcript	0	3.24	1.45	4.16	0.00	3.54	6.43	0.00
4	406007	Transcript	0	0	0	0	0	0	0	0
5	402698	Transcript	0	0	0	0	0	0	0	0
6	402268	Transcript	0	0.58	0.00	0.79	0.00	2.45	0.10	0.21
7	405814	Transcript	0	0.44	0.32	0.85	0.44	3.53	3.02	0.19
8	404451	Transcript	0	0.01	0.00	0.03	0.01	0.20	0.03	0.00
9	IG5_SR4	SilentIntergenicRegion	0	0.94	0.00	2.10	1.34	4.54	8.54	0.00
10	IG5_AR3	ActiveIntergenicRegion	0	1.40	0.54	4.86	1.71	11.26	3.47	0.44
11	IG5_SR2	SilentIntergenicRegion	0	2.82	0.81	4.63	4.61	21.62	1.96	1.87
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1c	ExonRegion	0	0.04	0.00	0.49	0.00	0.36	0.75	0.00
16	ER1d	ExonRegion	0	0.77	0.00	1.94	0.53	5.21	2.45	0.00
17	E1_Af	KnownBoundary	0	0.00	0.00	0.89	0.00	8.74	2.87	0.00
18	E1_Ag	KnownBoundary	0	0.00	0.00	4.35	1.68	3.00	1.58	0.00
19	ER1e	ExonRegion	0	0.77	0.00	4.49	1.25	14.58	3.63	0.00
20	ER1f	ExonRegion	0	0.77	0.00	6.10	1.25	17.01	3.68	0.00
21	ER1g	ExonRegion	0	1.03	0.49	4.95	0.61	7.53	1.93	0.00
22	E1a_E2a	KnownJunction	0	1.60	1.63	3.79	0.00	1.18	1.23	0.00
23	ER2a	ExonRegion	0	2.98	1.08	2.98	1.93	4.02	2.98	0.00
24	E2a_E3a	KnownJunction	0	4.87	1.50	6.58	2.49	4.13	5.36	0.00
25	ER3a	ExonRegion	0	4.33	0.72	10.16	0.68	12.26	7.33	0.00
26	E3_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E3a_E5b	KnownJunction	0	3.66	0.00	5.86	1.27	21.14	7.80	0.00
28	ER3b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E3b_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	ER5a	ExonRegion	0	0.06	0.00	0.16	0.03	0.98	0.15	0.00
33	E5_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
34	ER5b	ExonRegion	0	6.51	0.33	5.76	2.48	13.51	16.54	0.00
35	E5_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E5a_E5c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E5a_E6a	KnownJunction	0	6.21	1.58	7.39	0.00	16.07	12.86	0.00
38	ER5c	ExonRegion	0	0.37	0.00	0.97	0.00	2.91	0.00	0.02
39	E5_Db	KnownBoundary	0	0.83	0.00	1.60	0.00	5.21	0.00	0.00
40	ER5d	ExonRegion	0	1.17	0.00	1.57	0.00	4.37	0.21	0.42
41	E5_Ac	KnownBoundary	0	12.15	9.67	11.04	10.38	3.39	14.18	11.75
42	ER5e	ExonRegion	0	0.35	0.00	2.11	0.00	3.65	0.59	0.00
43	E5c_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E5_Dd	NovelBoundary	0	12.83	21.62	7.99	2.98	1.11	5.49	2.34
45	ER5f	ExonRegion	0	0.00	0.00	0.00	0.00	0.53	0.00	0.00
46	ER6a	ExonRegion	0	6.21	1.66	7.20	1.30	11.85	15.86	0.57
47	E6_Da	KnownBoundary	0	0.65	0.00	1.87	0.00	2.07	0.00	0.00
48	E6a_E6b	KnownJunction	0	6.71	0.00	3.55	1.33	4.22	16.24	0.00
49	ER6b	ExonRegion	0	1.79	1.52	0.41	1.06	1.56	1.26	0.17
50	E6_Ab	KnownBoundary	0	1.75	6.41	0.00	1.68	0.00	1.29	0.00
51	ER6c	ExonRegion	0	5.27	5.14	6.22	2.49	2.60	16.17	0.00
52	E6b_E7a	KnownJunction	0	2.42	1.63	9.07	0.00	1.18	11.15	0.00
53	ER7a	ExonRegion	0	3.60	1.31	6.53	0.77	5.45	8.78	0.32
54	E7a_E8a	KnownJunction	0	5.12	1.58	3.98	0.00	7.58	9.09	0.00
55	ER7b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.92	0.67
56	ER8a	ExonRegion	0	2.85	0.74	4.38	0.00	8.86	10.80	0.00
57	E8a_E9a	KnownJunction	0	3.40	1.08	4.93	0.00	2.84	6.73	0.00
58	E8b_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER8b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER9a	ExonRegion	0	3.07	1.82	3.39	0.00	4.25	6.13	0.00
61	ER9b	ExonRegion	0	4.72	3.52	5.44	0.00	9.41	2.72	0.00
62	E9a_E10a	KnownJunction	0	4.54	1.42	7.63	0.00	10.05	7.13	0.00
63	ER10a	ExonRegion	0	3.17	1.56	6.84	1.80	9.31	10.84	0.39
64	E10_Da	KnownBoundary	0	2.05	0.00	4.11	1.68	6.73	1.66	0.00
65	E10_Db	KnownBoundary	0	1.03	0.00	0.82	0.00	4.52	1.63	0.00
66	E10_Dc	KnownBoundary	0	1.47	1.47	0.00	1.19	1.04	6.03	0.89
67	ER10b	ExonRegion	0	2.66	0.95	2.90	2.94	8.50	6.57	0.67
68	ER10c	ExonRegion	0	2.82	1.21	2.03	3.74	8.10	7.36	0.67
69	ER10d	ExonRegion	0	1.31	0.25	1.77	0.60	4.27	4.78	0.56
70	E10d_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	E11_Aa	NovelBoundary	0	1.54	0.00	4.25	3.36	9.89	3.56	0.89
72	ER11a	ExonRegion	0	0.00	0.71	0.79	0.73	6.30	4.26	0.00
73	IG4	Intergenic	0	1.33	1.08	2.64	1.32	7.65	2.28	0.51
74	IG4_SR1	SilentIntergenicRegion	0	1.33	1.08	2.65	1.32	7.66	2.28	0.51