Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RABL2B	Gene	0	29.74	12.88	19.41	9.31	23.74	7.57	26.67
2	395595	Transcript	0	3.31	1.03	1.75	0.85	2.13	1.74	5.34
3	356653	Transcript	0	0	0	0	0	0	0	0
4	395591	Transcript	0	0.90	0.00	0.00	1.41	0.00	0.00	0.75
5	395598	Transcript	0	0	0	0	0	0	0	0
6	354869	Transcript	0	0.27	0.52	0.00	1.16	2.26	0.00	0.00
7	395593	Transcript	0	1.69	0.54	0.52	0.38	0.84	0.00	0.78
8	395590	Transcript	0	2.70	1.11	0.79	0.32	2.16	0.20	2.39
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.40	0.00	0.00
10	E1_Ae	KnownBoundary	0	6.71	3.97	5.02	5.53	14.32	1.34	12.44
11	ER1b	ExonRegion	0	0.26	0.00	0.00	0.00	0.81	0.00	0.00
12	ER1c	ExonRegion	0	1.49	1.21	0.40	2.64	3.10	0.58	3.61
13	ER1d	ExonRegion	0	3.33	2.43	3.84	5.30	8.77	2.45	8.15
14	ER1e	ExonRegion	0	3.65	5.64	4.70	4.50	11.42	3.06	8.48
15	E1a_E2a	KnownJunction	0	1.00	0.00	1.38	1.03	1.18	2.97	3.35
16	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E2_Aa	NovelBoundary	0	12.23	14.76	4.66	5.93	9.66	1.13	7.61
20	ER2a	ExonRegion	1	12.24	4.11	5.61	2.38	6.95	4.00	18.00
21	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER2b	ExonRegion	1	9.99	5.87	2.03	1.45	14.31	2.66	15.52
23	ER2c	ExonRegion	0	3.01	0.00	0.70	0.64	1.79	0.00	2.26
24	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER3a	ExonRegion	1	8.15	7.53	2.44	2.74	19.60	3.92	16.06
26	ER3b	ExonRegion	0	22.45	11.38	23.36	12.44	35.40	7.51	48.35
27	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER4a	ExonRegion	0	30.81	25.92	31.16	21.49	18.90	10.75	48.59
30	ER5a	ExonRegion	0	62.93	47.68	49.30	43.27	51.63	19.23	101.26
31	E5a_E6a	KnownJunction	0	87.05	49.08	70.79	43.21	80.85	28.57	118.36
32	E5a_E9a	KnownJunction	0	0.90	0.00	0.00	1.41	0.00	0.00	0.75
33	ER6a	ExonRegion	0	95.37	58.71	78.97	32.48	55.58	30.47	110.97
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E6a_E8a	KnownJunction	0	104.96	50.81	95.33	32.73	92.05	25.08	95.83
36	Ix_AR2	ActiveIntronRegion	0	13.17	1.91	2.71	4.10	9.37	0.00	15.80
37	Ix_AR1	ActiveIntronRegion	0	6.70	3.82	1.91	0.93	6.28	0.69	8.79
38	ER7a	ExonRegion	0	5.39	2.23	1.58	0.64	4.32	0.39	4.79
39	ER8a	ExonRegion	0	72.75	31.96	67.94	20.16	39.62	18.28	80.66
40	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E8a_E9b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER9a	ExonRegion	0	89.14	22.47	63.00	16.83	38.47	15.94	80.61
43	ER9b	ExonRegion	0	79.15	12.06	55.08	17.36	62.63	14.52	57.53
44	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E9b_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER9c	ExonRegion	0	5.46	2.71	1.90	1.25	2.43	0.00	1.64
47	ER10a	ExonRegion	0	17.50	11.90	13.35	7.56	23.33	5.20	14.53
48	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	ER11a	ExonRegion	0	62.59	25.77	39.18	19.16	49.83	16.59	46.29
50	ER11b	ExonRegion	0	4.15	1.21	4.74	3.24	12.47	0.49	4.86
51	ER11c	ExonRegion	0	0.27	0.52	0.00	1.16	2.26	0.00	0.00