Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EIF4ENIF1	Gene	0	22.63	39.32	46.36	37.00	69.34	37.01	65.79
2	397520	Transcript	0	0.19	0.00	0.17	0.00	0.00	0.00	0.00
3	397518	Transcript	0	1.03	0.00	3.26	2.56	3.33	0.00	0.00
4	330125	Transcript	0	0	0	0	0	0	0	0
5	382180	Transcript	0	0	0	0	0	0	0	0
6	344710	Transcript	0	6.45	8.88	14.41	6.11	13.37	9.91	26.33
7	397525	Transcript	0	0.00	0.56	1.19	0.00	1.35	0.41	0.90
8	397523	Transcript	0	0	0	0	0	0	0	0
9	ER1a	ExonRegion	0	0.37	0.00	0.33	0.00	0.00	0.00	0.00
10	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	0.42	0.00	1.93	2.00	2.14	0.00	0.00
12	E2a_E5a	KnownJunction	0	1.64	0.00	4.60	3.12	4.52	0.00	0.00
13	ER3a	ExonRegion	0	0.22	4.71	1.14	1.25	0.87	2.50	1.92
14	ER4a	ExonRegion	0	0.00	0.47	0.18	0.00	0.00	0.00	0.00
15	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER5a	ExonRegion	0	15.27	26.49	30.81	14.39	18.66	23.66	30.13
17	E5a_E6a	KnownJunction	0	25.80	36.96	58.77	28.72	39.14	29.37	50.23
18	ER6a	ExonRegion	0	21.52	32.19	42.42	24.27	53.23	31.94	36.54
19	E6a_E7a	KnownJunction	0	27.94	31.81	35.34	25.66	39.72	27.50	30.63
20	ER7a	ExonRegion	0	23.31	32.63	32.90	24.05	40.84	25.22	34.79
21	ER7b	ExonRegion	0	22.29	36.42	37.64	27.04	39.40	24.24	45.83
22	E7b_E8a	KnownJunction	0	18.14	38.86	33.37	34.76	36.70	35.99	37.98
23	E7b_E10a	KnownJunction	0	0.95	0.00	0.82	0.00	0.00	1.66	1.68
24	I7_AR1	ActiveIntronRegion	0	3.48	11.48	6.46	12.92	1.05	13.66	2.96
25	E8_Aa	NovelBoundary	1	1.79	15.55	10.07	31.78	2.24	19.91	3.64
26	ER8a	ExonRegion	0	19.88	51.38	37.99	43.69	50.45	45.84	47.34
27	E8a_E9a	KnownJunction	0	21.51	51.75	40.71	35.38	68.88	34.73	45.73
28	I8_AR3	ActiveIntronRegion	0	1.54	6.51	3.12	4.99	2.22	13.29	1.39
29	I8_AR4	ActiveIntronRegion	1	1.54	4.32	2.71	4.99	0.81	14.10	2.02
30	ER9a	ExonRegion	0	27.07	59.20	55.80	52.86	75.61	41.55	63.22
31	E9_Da	NovelBoundary	0	1.60	1.13	3.12	9.97	0.00	4.98	0.00
32	E9a_E10a	KnownJunction	1	29.74	59.69	58.43	52.91	79.95	25.62	59.22
33	ER10a	ExonRegion	0	27.54	51.78	51.08	59.74	85.15	31.51	56.46
34	E10a_E11a	KnownJunction	0	20.08	62.03	52.97	58.33	64.92	33.02	55.89
35	ER11a	ExonRegion	0	25.34	55.25	42.71	39.48	74.08	34.99	56.10
36	E11a_E12a	KnownJunction	0	26.40	43.95	49.15	26.28	84.42	27.84	44.96
37	ER12a	ExonRegion	0	32.97	52.29	60.04	41.97	91.54	37.35	61.79
38	E12a_E13a	KnownJunction	0	48.08	40.88	63.57	38.47	141.34	38.43	72.10
39	E13_Aa	NovelBoundary	0	9.85	16.42	7.95	30.42	13.37	16.27	7.19
40	ER13a	ExonRegion	0	49.64	62.46	80.32	46.38	103.01	55.58	96.66
41	E13_Da	KnownBoundary	0	47.90	55.98	72.89	39.26	98.57	45.29	88.44
42	E13a_E14a	KnownJunction	0	2.00	2.02	1.65	1.27	0.00	3.00	0.54
43	ER13b	ExonRegion	0	39.85	50.15	63.15	42.50	114.44	37.80	89.76
44	E13_Db	NovelBoundary	1	11.57	19.70	4.02	9.08	62.06	9.43	23.65
45	E13b_E14a	KnownJunction	0	34.15	47.21	52.45	38.58	109.66	30.58	94.77
46	E13b_E15a	KnownJunction	0	0.62	2.89	3.45	5.66	0.00	3.91	0.00
47	ER14a	ExonRegion	0	29.13	43.90	50.44	43.30	102.31	38.96	85.28
48	E14a_E15a	KnownJunction	0	21.15	33.29	48.47	34.81	115.70	36.21	74.06
49	ER15a	ExonRegion	0	29.76	38.99	57.46	47.04	78.17	41.44	85.12
50	E15a_E16a	KnownJunction	0	19.99	38.38	58.79	45.27	88.98	32.91	87.81
51	ER16a	ExonRegion	0	30.94	43.07	65.82	43.53	102.13	40.35	95.50
52	E16a_E17a	KnownJunction	0	9.76	13.14	23.32	7.26	21.07	13.21	47.12
53	E16a_E17b	KnownJunction	0	14.30	23.09	26.02	22.00	47.81	31.92	42.26
54	ER17a	ExonRegion	0	13.06	20.35	31.84	15.90	32.39	21.76	55.99
55	ER17b	ExonRegion	0	23.94	43.24	55.04	50.64	75.02	48.45	93.03
56	E17a_E18a	KnownJunction	0	27.22	46.87	65.70	38.36	97.33	50.33	101.75
57	I17_AR2	ActiveIntronRegion	0	3.78	9.19	4.42	8.24	2.50	4.97	6.01
58	I17_AR3	ActiveIntronRegion	0	2.31	6.18	3.51	11.34	4.56	3.79	6.68
59	I17_SR2	SilentIntronRegion	0	2.13	5.53	2.03	11.15	3.55	3.47	5.77
60	I17_AR4	ActiveIntronRegion	0	3.37	6.30	6.57	10.56	4.17	5.55	5.70
61	E18_Aa	NovelBoundary	1	20.41	8.25	32.06	15.44	4.22	6.11	13.07
62	ER18a	ExonRegion	0	21.08	47.35	67.35	60.32	121.61	65.15	115.30
63	E18_Da	NovelBoundary	0	6.44	14.50	10.42	11.24	3.07	3.99	10.26
64	E18a_E19a	KnownJunction	1	18.73	33.68	68.46	43.70	120.36	69.01	109.56
65	I18	Intron	0	5.13	8.38	7.33	4.93	5.08	6.16	8.25
66	I18_AR1	ActiveIntronRegion	0	5.34	9.73	8.46	6.25	5.37	7.64	9.03
67	E19_Aa	NovelBoundary	0	4.02	11.30	6.06	6.15	6.43	5.25	2.32
68	ER19a	ExonRegion	0	35.21	50.24	75.36	47.76	112.13	61.75	122.24
69	E19_Da	NovelBoundary	0	5.74	9.77	5.55	10.05	3.34	10.00	2.09
70	E19a_E20a	KnownJunction	0	28.52	59.58	81.87	45.65	119.67	52.15	129.38
71	I19_AR1	ActiveIntronRegion	0	5.81	8.04	10.47	8.26	2.74	6.61	5.29
72	ER20a	ExonRegion	0	30.48	52.21	70.18	47.03	117.87	52.89	122.76
73	E20_Da	NovelBoundary	0	5.12	11.77	8.46	4.80	5.60	4.96	9.37
74	E20a_E21a	KnownJunction	0	34.51	51.65	69.80	42.91	125.91	30.63	105.09
75	E21_Aa	NovelBoundary	0	0.77	4.10	5.78	7.53	0.00	10.24	1.98
76	ER21a	ExonRegion	0	27.64	52.34	67.02	43.85	100.68	49.05	107.93
77	E21_Da	NovelBoundary	1	1.80	10.98	14.77	12.95	9.41	18.28	11.16
78	E21a_E22a	KnownJunction	0	30.41	51.47	72.99	52.50	90.09	49.82	121.14
79	I21	Intron	0	6.22	9.16	9.34	8.62	6.23	3.20	11.43
80	I21_AR1	ActiveIntronRegion	0	6.42	10.27	10.40	8.20	6.57	3.51	12.47
81	I21_SR1	SilentIntronRegion	0	5.72	5.55	5.94	10.36	5.20	2.22	8.15
82	ER22a	ExonRegion	0	14.01	25.77	33.89	30.77	54.91	33.19	52.25
83	ER22b	ExonRegion	0	0.00	1.21	4.40	1.25	4.66	4.60	4.38
84	ER22c	ExonRegion	0	0.00	1.21	3.39	0.00	4.05	1.23	2.70
85	IG22	Intergenic	0	6.95	11.41	17.47	10.17	19.06	10.25	17.50
86	IG22_AR2	ActiveIntergenicRegion	0	7.41	12.14	18.52	10.91	19.98	11.16	18.63
87	IG22_SR1	SilentIntergenicRegion	0	2.38	2.37	10.01	2.37	19.78	4.75	8.67
88	IG22_AR1	ActiveIntergenicRegion	0	7.89	14.18	22.19	12.07	27.34	11.49	23.28