Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RGL4	Gene	0	20.77	6.10	14.97	7.43	14.06	6.73	10.81
2	401461	Transcript	0	4.44	1.62	4.37	1.93	3.90	2.32	2.75
3	382831	Transcript	0	0.00	0.00	0.24	0.00	0.10	0.00	0.13
4	290691	Transcript	0	0	0	0	0	0	0	0
5	382833	Transcript	0	0.00	0.34	0.12	0.00	3.04	0.00	0.19
6	382834	Transcript	0	0.00	0.00	0.10	0.00	0.16	0.00	0.00
7	IG46_AR1	ActiveIntergenicRegion	0	15.34	5.12	10.73	4.46	26.38	3.74	5.86
8	IG46_SR1	SilentIntergenicRegion	0	8.66	2.88	4.15	3.04	10.85	3.03	3.68
9	IG46_AR2	ActiveIntergenicRegion	0	13.18	1.86	8.30	0.41	13.21	2.26	2.52
10	IG46_AR8	ActiveIntergenicRegion	0	14.71	9.13	14.13	18.12	16.83	12.40	8.98
11	IG46_AR10	ActiveIntergenicRegion	0	6.68	3.20	3.47	1.94	10.45	4.54	6.11
12	ER1a	ExonRegion	0	3.89	0.65	2.22	1.20	3.02	0.01	2.38
13	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	I1	Intron	1	13.20	7.43	11.96	8.48	16.06	8.39	12.37
15	I1_AR2	ActiveIntronRegion	1	28.71	15.84	26.37	19.76	35.98	19.79	27.04
16	E2_Aa	NovelBoundary	0	27.27	13.87	24.57	12.35	25.96	22.59	14.66
17	ER2a	ExonRegion	0	18.31	7.04	18.97	8.45	16.50	11.62	11.36
18	E2_Ab	KnownBoundary	0	27.02	13.66	16.74	18.42	14.34	17.07	21.58
19	ER2b	ExonRegion	0	28.07	10.83	15.66	15.34	22.75	14.67	15.65
20	E2_Da	KnownBoundary	0	31.91	13.08	20.59	12.73	24.27	15.14	13.17
21	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER2c	ExonRegion	0	49.20	12.06	34.49	14.34	29.01	14.18	23.55
23	E2_Db	NovelBoundary	0	25.05	12.01	15.23	5.80	8.83	17.15	14.72
24	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	I2	Intron	0	7.99	4.40	5.89	4.55	9.78	8.11	7.30
26	I2_AR1	ActiveIntronRegion	1	8.08	4.47	5.98	4.62	9.90	8.23	7.39
27	E3_Aa	NovelBoundary	0	37.44	8.20	28.02	14.52	19.16	7.48	16.97
28	ER3a	ExonRegion	0	18.21	6.17	15.36	8.79	14.01	6.24	11.32
29	E3_Da	NovelBoundary	0	27.09	11.61	31.21	10.02	15.05	8.92	12.77
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	I3	Intron	0	27.81	7.86	22.19	8.10	15.54	7.30	11.99
32	I3_AR1	ActiveIntronRegion	0	28.19	7.97	22.47	8.20	15.75	7.40	12.14
33	E4_Aa	NovelBoundary	0	31.28	11.17	24.03	14.25	23.17	4.53	16.31
34	ER4a	ExonRegion	0	20.12	8.55	15.52	9.37	14.26	7.19	12.95
35	E4_Da	NovelBoundary	0	21.15	11.24	15.06	10.59	18.17	12.46	17.40
36	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	I4	Intron	1	21.04	10.54	16.45	13.16	21.21	14.16	20.15
38	I4_AR1	ActiveIntronRegion	1	21.10	10.57	16.50	13.19	21.27	14.20	20.20
39	E5_Aa	NovelBoundary	0	18.89	16.37	16.15	17.88	17.40	13.80	17.91
40	ER5a	ExonRegion	0	17.04	8.12	9.67	9.61	16.01	8.59	12.04
41	E5_Da	NovelBoundary	0	20.33	7.04	10.82	17.18	15.70	5.60	18.85
42	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	I5	Intron	1	10.02	4.90	10.72	10.06	11.56	10.46	9.86
44	I5_AR1	ActiveIntronRegion	1	10.08	4.92	10.77	10.11	11.63	10.52	9.91
45	E6_Aa	NovelBoundary	0	44.25	25.88	56.14	47.25	24.53	30.31	24.09
46	ER6a	ExonRegion	0	10.63	8.70	15.33	20.89	17.74	15.96	6.85
47	E6_Da	NovelBoundary	0	46.87	15.71	27.23	27.33	24.46	30.69	23.93
48	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	I6	Intron	0	73.36	11.08	62.42	36.80	30.96	27.95	19.14
50	I6_AR1	ActiveIntronRegion	0	73.62	11.12	62.66	36.94	31.07	28.07	19.21
51	E7_Aa	NovelBoundary	1	157.02	24.85	119.91	55.35	37.23	42.40	27.33
52	ER7a	ExonRegion	1	12.45	2.46	11.15	3.74	16.68	2.45	3.37
53	E7_Da	NovelBoundary	0	106.01	27.37	89.05	52.88	32.48	27.44	31.14
54	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	I7	Intron	0	24.31	7.71	19.27	10.47	13.81	8.27	7.38
57	I7_AR1	ActiveIntronRegion	0	60.50	18.89	48.92	26.84	32.98	20.34	16.65
58	ER8a	ExonRegion	0	0.00	0.00	0.30	0.00	0.49	0.00	0.00
59	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER9a	ExonRegion	0	0.12	1.18	0.12	0.03	0.58	0.02	0.04
61	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.02	0.00	0.00
63	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER12a	ExonRegion	0	0.00	0.30	0.00	0.00	1.00	0.00	0.00
67	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	E12a_E15a	KnownJunction	0	0.00	1.60	0.00	0.00	0.00	0.00	0.00
70	ER13a	ExonRegion	0	0.00	0.00	0.73	0.00	0.29	0.00	0.38
71	E13a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER14a	ExonRegion	0	0.00	1.01	0.36	0.00	9.12	0.00	0.56
73	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER15a	ExonRegion	0	0.18	1.91	0.68	0.00	0.65	0.00	0.80
75	ER15b	ExonRegion	0	0.00	0.43	0.68	0.00	0.00	0.00	0.00