Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LARGE	Gene	0	19.70	33.60	47.19	78.23	242.64	77.05	23.11
2	397394	Transcript	0	0.00	0.00	0.00	1.80	0.27	0.27	0.00
3	402320	Transcript	0	0	0	0	0	0	0	0
4	337431	Transcript	0	0	0	0	0	0	0	0
5	354992	Transcript	0	0	0	0	0	0	0	0
6	IG44_AR2	ActiveIntergenicRegion	0	0.65	0.88	1.91	1.80	9.39	0.67	0.00
7	ER1a	ExonRegion	0	0.00	0.00	0.00	1.80	0.27	0.27	0.00
8	ER1b	ExonRegion	0	0.74	8.65	0.45	10.65	6.29	10.00	0.26
9	E1_Ac	KnownBoundary	0	0.63	21.23	2.08	15.25	3.83	18.97	0.80
10	ER1c	ExonRegion	0	6.81	35.78	11.25	42.65	24.76	47.82	5.03
11	E1a_E2a	KnownJunction	0	4.71	8.43	12.16	21.97	7.52	13.29	0.00
12	E1a_E3a	KnownJunction	0	13.69	37.83	21.87	43.40	60.61	44.94	10.29
13	I1	Intron	0	14.40	9.43	16.90	7.91	15.26	8.96	2.69
14	I1_AR1	ActiveIntronRegion	0	2.12	7.60	4.62	4.48	2.22	6.29	0.27
15	I1_SR1	SilentIntronRegion	0	15.23	9.15	17.93	6.46	13.00	5.88	2.36
16	I1_AR2	ActiveIntronRegion	0	24.60	10.44	25.03	5.91	17.58	6.11	5.13
17	I1_AR3	ActiveIntronRegion	0	24.34	7.35	24.02	1.99	17.18	6.13	5.78
18	I1_SR2	SilentIntronRegion	0	16.03	8.28	16.46	7.33	15.07	6.42	2.04
19	I1_AR4	ActiveIntronRegion	0	9.58	3.00	8.56	5.23	9.30	5.23	1.73
20	I1_SR3	SilentIntronRegion	0	14.71	12.24	17.43	9.29	15.67	13.10	3.76
21	I1_AR5	ActiveIntronRegion	0	15.71	12.42	19.99	10.36	18.00	17.22	3.31
22	I1_SR4	SilentIntronRegion	0	17.07	10.95	22.96	8.81	19.22	11.60	2.69
23	I1_AR6	ActiveIntronRegion	0	9.29	4.28	15.32	11.40	14.04	9.92	3.95
24	I1_AR7	ActiveIntronRegion	1	25.70	12.77	28.68	7.81	23.98	13.28	3.28
25	I1_SR5	SilentIntronRegion	0	13.62	7.01	16.60	6.42	12.00	6.41	2.15
26	I1_AR8	ActiveIntronRegion	1	9.84	13.44	21.71	8.01	16.72	7.14	0.06
27	I1_AR9	ActiveIntronRegion	1	17.71	12.60	22.24	5.72	17.22	8.49	1.81
28	I1_SR6	SilentIntronRegion	1	20.85	6.56	27.93	4.95	15.31	5.66	2.76
29	I1_AR10	ActiveIntronRegion	0	10.15	6.90	15.41	7.13	13.28	4.42	1.73
30	I1_AR11	ActiveIntronRegion	1	9.73	7.90	20.12	4.71	12.70	6.53	1.88
31	I1_SR7	SilentIntronRegion	0	15.87	9.55	19.76	8.20	18.15	9.26	2.67
32	I1_AR12	ActiveIntronRegion	0	13.70	6.99	14.50	6.40	16.93	8.18	3.43
33	I1_SR8	SilentIntronRegion	0	13.27	9.35	20.47	11.87	23.48	10.92	2.30
34	I1_AR13	ActiveIntronRegion	1	18.92	11.72	16.58	8.92	21.68	17.32	1.53
35	I1_SR9	SilentIntronRegion	0	10.24	9.15	11.28	7.21	15.13	8.54	2.92
36	I1_AR14	ActiveIntronRegion	0	10.52	8.46	10.91	6.69	10.69	5.62	2.97
37	I1_SR10	SilentIntronRegion	0	14.72	10.43	14.82	9.14	15.43	8.98	2.81
38	I1_AR15	ActiveIntronRegion	0	16.09	9.50	13.13	7.47	18.09	11.35	2.96
39	I1_AR16	ActiveIntronRegion	0	8.95	7.62	12.23	9.12	10.84	8.67	2.23
40	I1_SR12	SilentIntronRegion	0	10.18	6.28	8.40	3.83	8.55	5.05	1.54
41	I1_SR13	SilentIntronRegion	0	12.73	8.29	13.40	9.17	12.34	8.65	3.15
42	I1_AR18	ActiveIntronRegion	0	10.02	9.50	14.69	10.33	13.85	8.07	4.26
43	E2_Aa	NovelBoundary	0	7.38	9.33	15.35	13.38	13.72	8.33	3.58
44	ER2a	ExonRegion	0	3.63	9.39	10.67	17.06	16.13	15.43	0.25
45	E2_Da	NovelBoundary	0	15.34	15.29	14.61	14.82	16.44	16.56	6.33
46	E2a_E3a	KnownJunction	0	4.39	8.70	9.10	12.43	13.95	13.16	0.66
47	I2_AR5	ActiveIntronRegion	0	22.28	3.51	16.33	2.49	6.03	3.13	3.15
48	I2_SR3	SilentIntronRegion	0	21.52	2.43	15.66	2.96	8.71	3.98	3.37
49	I2_AR6	ActiveIntronRegion	0	14.16	7.40	9.65	3.81	11.80	6.58	1.87
50	I2_AR7	ActiveIntronRegion	0	8.61	9.34	5.94	5.01	10.90	3.22	3.36
51	I2_SR5	SilentIntronRegion	0	7.26	11.27	7.20	6.73	9.34	7.58	2.59
52	I2_AR14	ActiveIntronRegion	0	11.36	19.37	15.22	16.23	15.46	27.22	7.21
53	I2_SR6	SilentIntronRegion	0	5.89	8.92	6.58	4.70	7.47	5.87	2.18
54	I2_AR17	ActiveIntronRegion	0	7.76	7.54	9.75	6.45	9.29	8.63	3.17
55	I2_AR18	ActiveIntronRegion	0	8.29	7.63	8.14	3.32	7.60	5.80	2.07
56	ER3a	ExonRegion	0	22.38	59.72	48.88	93.83	134.37	91.31	26.83
57	E3a_E4a	KnownJunction	0	24.68	49.78	51.59	106.44	157.61	94.47	32.00
58	I3_AR17	ActiveIntronRegion	0	5.86	8.50	2.80	3.21	7.85	1.67	2.14
59	I3_SR17	SilentIntronRegion	0	2.48	8.33	2.00	1.80	5.84	1.34	1.70
60	I3_SR19	SilentIntronRegion	1	3.99	10.63	1.76	3.47	7.90	1.51	2.72
61	I3_AR20	ActiveIntronRegion	0	3.19	8.38	1.27	1.37	6.71	2.94	2.59
62	I3_SR20	SilentIntronRegion	1	5.81	12.21	3.56	3.19	6.26	1.16	2.13
63	I3_AR21	ActiveIntronRegion	0	4.50	7.63	6.40	3.48	9.86	1.55	2.04
64	I3_SR21	SilentIntronRegion	0	3.12	9.10	4.44	4.28	7.60	3.89	2.07
65	I3_AR23	ActiveIntronRegion	0	6.57	9.40	5.60	2.25	9.96	2.56	3.53
66	I3_AR24	ActiveIntronRegion	1	8.62	20.25	4.59	1.11	8.19	3.68	7.12
67	I3_AR25	ActiveIntronRegion	1	10.89	19.84	5.31	1.87	9.04	3.68	7.65
68	I3_AR26	ActiveIntronRegion	1	15.00	19.89	3.71	2.49	13.00	3.68	6.07
69	I3_AR27	ActiveIntronRegion	1	18.15	11.59	7.17	3.49	22.50	1.69	3.98
70	I3_AR28	ActiveIntronRegion	0	8.66	11.34	8.44	2.49	9.88	2.70	2.70
71	ER4a	ExonRegion	0	13.07	42.13	37.40	79.59	164.27	73.56	19.25
72	E4a_E5a	KnownJunction	0	20.18	44.27	49.45	63.42	198.62	67.43	21.55
73	ER5a	ExonRegion	0	20.93	63.00	58.26	95.26	275.69	83.55	28.34
74	E5a_E6a	KnownJunction	0	17.09	70.54	61.81	97.66	355.98	93.53	19.88
75	ER6a	ExonRegion	0	24.22	58.85	63.22	116.08	306.20	93.54	31.95
76	E6a_E7a	KnownJunction	0	32.35	36.52	67.24	126.62	373.46	62.79	30.71
77	ER7a	ExonRegion	0	29.84	52.58	69.91	129.85	325.91	103.50	32.82
78	E7a_E8a	KnownJunction	0	30.26	53.94	56.30	122.21	364.37	89.32	32.82
79	ER8a	ExonRegion	0	29.93	45.77	80.78	117.80	336.20	105.31	39.99
80	E8a_E9a	KnownJunction	0	23.67	33.63	75.80	115.81	315.18	101.89	47.81
81	ER9a	ExonRegion	0	19.02	42.79	66.25	105.55	301.90	91.26	43.16
82	E9a_E10a	KnownJunction	0	19.46	45.27	74.70	96.74	364.70	105.40	46.96
83	E10_Aa	NovelBoundary	1	7.59	1.26	26.86	0.00	2.17	0.00	0.00
84	ER10a	ExonRegion	0	16.84	46.49	73.64	101.62	342.41	76.53	39.72
85	E10a_E11a	KnownJunction	1	15.52	36.54	77.69	76.23	452.09	66.25	36.69
86	E10a_E12a	KnownJunction	0	0.00	0.00	0.59	0.00	3.18	1.26	0.00
87	ER11a	ExonRegion	0	21.07	40.56	65.89	106.31	283.89	78.27	29.14
88	E11a_E12a	KnownJunction	0	33.55	22.54	65.76	88.83	291.39	64.11	20.08
89	ER12a	ExonRegion	0	24.48	31.17	62.94	80.26	360.13	87.76	30.29
90	E12a_E13a	KnownJunction	0	21.45	32.34	38.00	64.72	263.47	76.83	28.42
91	ER13a	ExonRegion	0	18.43	44.57	42.37	108.02	327.36	90.82	36.32
92	E13a_E14a	KnownJunction	0	22.66	46.19	54.66	143.39	331.29	102.21	47.85
93	E14_Aa	NovelBoundary	1	9.93	3.44	19.50	3.14	1.18	1.66	0.00
94	ER14a	ExonRegion	0	19.75	37.36	48.91	99.08	385.07	83.18	33.73
95	E14a_E15a	KnownJunction	0	17.74	23.30	60.76	71.22	495.31	92.08	31.13
96	E15_Aa	NovelBoundary	1	6.14	0.00	19.83	1.35	1.96	0.00	0.70
97	ER15a	ExonRegion	0	21.85	35.52	53.59	84.98	346.94	85.89	25.14
98	E15a_E16a	KnownJunction	0	34.35	39.93	76.03	109.91	382.91	90.93	34.25
99	ER16a	ExonRegion	0	25.01	23.69	53.32	73.64	280.15	85.92	21.79
100	E16_Da	KnownBoundary	1	13.37	1.63	11.57	4.01	70.77	13.35	2.67
101	E16_Db	KnownBoundary	0	2.65	2.57	1.62	1.08	23.33	1.45	0.00
102	ER16b	ExonRegion	1	14.86	5.16	12.02	5.61	71.47	12.77	2.53
103	ER16c	ExonRegion	0	2.77	3.94	4.39	3.53	24.40	8.37	1.00
104	IG43_AR15	ActiveIntergenicRegion	0	2.43	2.83	5.78	3.14	15.92	6.64	0.52