Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ITSN1	Gene	0	30.62	14.83	33.69	14.38	221.32	25.81	43.27
2	399353	Transcript	0	0.08	0.00	0.09	0.00	4.37	0.14	1.66
3	399338	Transcript	0	0.67	0.48	0.00	0.60	1.09	0.00	0.47
4	399355	Transcript	0	0	0	0	0	0	0	0
5	381291	Transcript	0	0	0	0	0	0	0	0
6	381283	Transcript	0	0	0	0	0	0	0	0
7	399367	Transcript	0	0	0	0	0	0	0	0
8	381318	Transcript	0	0	0	0	0	0	0	0
9	381288	Transcript	0	0	0	0	0	0	0	0
10	381289	Transcript	0	0	0	0	0	0	0	0
11	399352	Transcript	0	0.77	0.00	1.35	0.00	5.67	4.90	0.67
12	399349	Transcript	0	0	0	0	0	0	0	0
13	381285	Transcript	0	0.99	0.10	2.47	0.00	0.57	0.05	0.52
14	399326	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	381284	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1a	ExonRegion	0	0.08	0.00	0.09	0.00	4.37	0.14	1.66
17	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.89
18	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	2.35	0.00	1.76
19	E1_Ad	KnownBoundary	0	1.03	0.00	0.89	0.00	10.58	0.00	0.89
20	E1_Ae	KnownBoundary	0	2.00	0.00	2.14	0.00	40.13	4.15	6.69
21	ER1b	ExonRegion	0	0.77	0.00	1.35	0.00	41.30	2.70	7.83
22	ER1c	ExonRegion	1	0.77	0.00	1.67	0.00	58.50	3.68	8.67
23	ER1d	ExonRegion	1	0.77	0.00	2.03	0.00	75.32	3.68	8.77
24	ER1e	ExonRegion	0	1.74	5.37	4.57	4.73	41.90	5.34	6.50
25	E1_Af	KnownBoundary	0	11.22	13.95	13.82	5.23	56.62	10.18	14.96
26	ER1f	ExonRegion	0	18.43	13.76	14.00	5.60	53.08	11.52	19.46
27	E1a_E2a	KnownJunction	0	13.95	16.10	21.97	8.80	64.76	14.90	23.52
28	ER2a	ExonRegion	0	13.78	22.93	28.26	16.41	148.91	18.54	26.29
29	E2a_E3a	KnownJunction	0	17.49	25.38	34.45	19.91	177.55	32.51	29.14
30	ER2b	ExonRegion	1	14.66	28.25	34.84	20.00	201.07	25.88	27.30
31	ER3a	ExonRegion	0	43.26	27.60	53.38	17.56	257.39	34.38	58.23
32	E3a_E4a	KnownJunction	0	56.65	24.56	60.70	28.96	309.51	60.49	75.96
33	ER4a	ExonRegion	0	52.81	37.13	75.03	36.43	314.40	65.84	79.14
34	E4a_E5a	KnownJunction	0	53.19	46.61	74.63	44.13	373.43	69.63	74.95
35	ER5a	ExonRegion	0	59.21	42.47	78.24	50.79	344.46	75.02	94.08
36	E5a_E6b	KnownJunction	0	53.34	22.72	62.19	29.94	309.88	51.08	74.47
37	E5a_E6c	KnownJunction	0	1.99	3.57	1.77	6.42	11.69	3.32	2.12
38	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER6b	ExonRegion	0	44.94	30.72	51.43	34.06	314.92	46.47	84.85
40	E6_Ac	KnownBoundary	0	37.82	30.42	53.62	23.05	273.01	49.04	71.26
41	ER6c	ExonRegion	0	33.47	35.48	50.62	27.62	278.66	40.76	61.61
42	E6b_E7a	KnownJunction	0	30.48	32.24	41.63	29.61	305.10	39.23	56.70
43	ER7a	ExonRegion	0	35.67	30.81	57.52	31.08	320.97	46.40	78.57
44	E7a_E8a	KnownJunction	1	32.86	23.30	75.89	27.66	329.54	50.25	81.56
45	ER8a	ExonRegion	0	35.74	34.69	67.38	34.10	316.28	61.29	100.11
46	E8a_E9a	KnownJunction	1	29.21	32.08	68.09	26.79	312.60	56.90	101.95
47	ER9a	ExonRegion	1	28.59	35.99	69.89	23.83	318.35	61.15	92.12
48	E9a_E10a	KnownJunction	0	30.09	44.92	60.48	25.82	293.51	49.82	80.67
49	ER10a	ExonRegion	0	32.31	36.85	61.01	28.77	278.69	53.01	90.59
50	E10a_E11a	KnownJunction	0	26.77	35.78	46.89	31.40	208.35	39.50	64.58
51	ER11a	ExonRegion	0	31.88	25.52	43.92	24.43	230.56	42.33	72.12
52	E11a_E12a	KnownJunction	1	24.72	24.46	55.53	24.63	250.31	45.43	63.53
53	ER12a	ExonRegion	0	32.75	23.73	43.95	22.91	233.15	37.89	62.30
54	E12a_E13a	KnownJunction	0	62.82	21.23	70.87	23.52	415.00	40.55	68.70
55	ER13a	ExonRegion	0	109.32	27.24	118.46	22.06	535.43	60.86	102.22
56	E13a_E14a	KnownJunction	1	132.99	30.32	155.17	33.70	546.91	82.33	80.30
57	ER14a	ExonRegion	1	183.91	39.17	164.15	41.47	817.44	77.11	117.92
58	E14a_E15a	KnownJunction	0	126.03	49.63	141.06	36.33	589.67	56.49	100.33
59	ER15a	ExonRegion	0	106.87	39.25	101.07	26.06	528.70	49.68	95.58
60	E15a_E16a	KnownJunction	0	114.54	37.59	94.56	30.40	509.19	40.66	90.79
61	ER16a	ExonRegion	0	81.23	38.26	94.69	22.38	464.59	44.43	96.12
62	E16a_E17a	KnownJunction	0	64.61	28.77	89.12	21.94	346.39	45.16	94.66
63	ER17a	ExonRegion	0	66.58	28.14	90.68	26.95	408.22	53.78	104.87
64	E17a_E18a	KnownJunction	0	85.65	26.72	92.63	29.26	470.02	61.69	91.06
65	ER18a	ExonRegion	0	74.91	30.05	80.17	31.10	481.62	49.60	95.86
66	E18a_E19a	KnownJunction	0	66.13	31.03	72.93	34.43	496.21	42.29	76.19
67	ER19a	ExonRegion	0	94.78	32.84	82.22	31.29	742.34	47.17	97.99
68	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	E19a_E22a	KnownJunction	0	111.94	28.27	82.46	44.21	595.39	51.91	98.93
70	E19b_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER19b	ExonRegion	0	0.38	1.21	0.68	0.31	9.11	0.00	1.01
72	E20a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
75	ER21a	ExonRegion	0	0.21	0.00	0.12	0.11	0.81	0.00	0.12
76	ER22a	ExonRegion	0	93.17	23.56	57.62	30.38	394.18	51.13	68.60
77	E22a_E23a	KnownJunction	1	48.67	15.32	23.22	18.26	189.19	34.04	34.84
78	ER23a	ExonRegion	0	24.68	9.41	16.08	14.19	160.63	20.96	33.01
79	E23a_E24a	KnownJunction	0	15.45	3.91	12.27	7.80	152.15	10.40	31.29
80	I23_AR4	ActiveIntronRegion	0	16.46	8.30	11.44	8.56	15.96	11.42	10.06
81	I23_SR4	SilentIntronRegion	0	14.88	9.82	8.28	5.77	11.45	9.57	6.52
82	E24_Aa	NovelBoundary	1	6.84	2.73	7.04	3.90	6.62	19.75	7.05
83	ER24a	ExonRegion	0	34.68	18.95	35.03	25.93	320.03	43.60	57.51
84	E24a_E25a	KnownJunction	0	22.58	22.70	36.07	18.83	307.09	46.60	60.79
85	ER25a	ExonRegion	0	26.76	19.09	31.33	16.51	261.73	44.79	53.36
86	E25a_E26a	KnownJunction	0	17.77	11.59	17.82	14.66	369.33	28.03	44.50
87	E25a_E29a	KnownJunction	0	19.78	5.02	16.14	3.82	70.80	13.00	22.79
88	ER26a	ExonRegion	0	29.69	13.98	30.36	10.63	336.87	26.42	48.45
89	E26a_E27a	KnownJunction	0	22.68	11.95	21.44	8.61	266.51	26.93	43.65
90	ER27a	ExonRegion	0	41.21	16.43	33.75	7.97	377.18	26.95	66.80
91	E27a_E29a	KnownJunction	0	51.51	15.53	35.12	6.85	506.13	25.92	65.58
92	ER28a	ExonRegion	0	0.67	0.48	0.00	0.60	1.09	0.00	0.47
93	E29_Aa	NovelBoundary	0	10.51	3.81	10.85	1.57	13.49	2.76	9.79
94	ER29a	ExonRegion	0	71.14	22.99	52.59	17.72	502.20	40.62	69.58
95	E29a_E30a	KnownJunction	0	67.26	35.78	60.83	27.77	558.46	54.62	79.34
96	ER30a	ExonRegion	0	68.27	44.67	55.25	31.70	636.76	44.57	98.64
97	E30a_E31a	KnownJunction	0	75.69	39.35	68.49	29.61	657.79	54.99	138.74
98	E31_Aa	NovelBoundary	1	31.21	3.57	30.72	0.00	8.62	0.99	4.70
99	ER31a	ExonRegion	1	48.60	35.75	44.13	27.73	498.64	52.17	118.87
100	E31a_E32a	KnownJunction	1	49.92	37.31	45.44	30.34	877.88	63.35	138.17
101	E31a_E33a	KnownJunction	0	0.00	0.00	1.42	1.49	1.18	1.02	3.77
102	ER32a	ExonRegion	1	47.26	35.23	48.09	26.81	735.35	63.75	139.98
103	E32_Db	KnownBoundary	1	28.62	23.33	45.41	23.30	485.49	47.06	97.51
104	ER32b	ExonRegion	1	37.58	28.18	46.13	27.47	627.15	54.11	116.95
105	ER32c	ExonRegion	0	30.90	16.62	35.77	18.77	348.59	35.43	57.69
106	ER32d	ExonRegion	0	0.77	0.00	1.35	0.00	6.48	4.90	1.35
107	ER32e	ExonRegion	0	0.77	0.00	1.35	0.00	5.67	4.90	0.67
108	ER33a	ExonRegion	0	1.45	0.34	3.21	0.00	0.56	1.42	2.58
109	E33a_E34a	KnownJunction	0	1.55	1.63	5.69	0.00	0.00	0.00	0.59
110	ER34a	ExonRegion	0	1.08	0.93	3.14	0.00	0.73	0.01	2.04
111	E34a_E35a	KnownJunction	0	0.00	1.63	3.15	0.00	0.00	0.00	0.89
112	ER35a	ExonRegion	0	0.62	0.24	3.72	1.03	0.94	1.39	1.01
113	E35a_E36a	KnownJunction	0	1.47	0.00	5.43	0.00	2.28	4.34	0.67
114	ER36a	ExonRegion	0	5.78	0.93	5.68	0.67	2.74	1.76	1.49
115	E36a_E37a	KnownJunction	0	6.61	1.47	3.81	1.46	0.88	1.61	2.42
116	E36a_E38a	KnownJunction	0	0.00	0.00	0.89	0.00	0.00	0.00	0.00
117	ER37a	ExonRegion	0	3.24	0.00	4.13	0.17	1.99	0.75	1.24
118	E37a_E38a	KnownJunction	0	0.70	0.00	2.05	0.00	3.27	0.00	0.00
119	E37a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
120	ER38a	ExonRegion	0	2.55	0.00	6.68	0.00	1.60	0.44	1.45
121	E38a_E39a	KnownJunction	0	1.54	0.00	8.06	0.00	4.36	0.00	1.78
122	ER39a	ExonRegion	0	4.19	0.82	7.40	0.76	1.61	0.03	1.26
123	E39a_E40a	KnownJunction	0	1.84	0.00	5.06	0.00	0.00	0.00	0.00
124	ER40a	ExonRegion	0	3.53	2.05	5.06	3.38	2.27	1.02	0.47
125	E40a_E41a	KnownJunction	0	3.02	0.00	6.05	0.00	1.80	0.00	0.79
126	ER41a	ExonRegion	0	2.54	0.56	8.64	2.35	1.75	0.72	2.20
127	E41a_E42a	KnownJunction	0	2.00	3.21	7.40	2.44	0.00	2.97	0.85
128	ER42a	ExonRegion	0	2.35	0.26	6.21	1.10	2.09	1.32	2.32
129	E42a_E43a	KnownJunction	0	1.03	0.00	2.59	0.00	3.27	1.07	1.52
130	ER43a	ExonRegion	0	1.40	0.00	4.41	0.54	1.85	2.30	0.87
131	E43_Da	KnownBoundary	0	0.78	0.00	4.22	0.00	1.96	0.00	0.54
132	ER43b	ExonRegion	0	1.61	0.00	4.00	0.57	2.20	1.24	0.02
133	E43_Db	KnownBoundary	0	2.34	0.00	1.98	2.06	2.21	0.00	0.00
134	ER43c	ExonRegion	0	2.94	0.26	3.94	0.84	1.79	1.47	1.42
135	E43_Dc	KnownBoundary	0	1.75	0.00	3.89	0.00	1.04	0.00	1.56
136	ER43d	ExonRegion	0	1.98	0.19	4.05	0.00	1.14	0.10	1.04