Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SETD4	Gene	0	19.43	15.60	22.69	10.48	43.79	9.46	13.59
2	399201	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	344232	Transcript	0	4.67	7.51	5.10	4.90	4.47	8.31	1.78
4	332131	Transcript	0	0	0	0	0	0	0	0
5	399212	Transcript	0	2.94	1.63	0.88	0.00	2.79	0.00	2.24
6	399208	Transcript	0	0	0	0	0	0	0	0
7	399205	Transcript	0	0	0	0	0	0	0	0
8	399215	Transcript	0	4.68	2.74	4.82	2.63	7.29	2.18	3.22
9	399207	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	IG21_SR4	SilentIntergenicRegion	0	7.60	10.80	1.21	1.21	0.33	2.07	1.26
11	IG21_AR4	ActiveIntergenicRegion	0	6.99	19.52	0.94	1.89	0.00	1.52	1.21
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.38	0.85	0.64	0.34	2.41	0.40	0.78
15	E2_Ab	KnownBoundary	0	0.00	3.52	1.31	1.65	6.16	1.66	1.40
16	ER2b	ExonRegion	0	7.89	22.76	10.49	8.91	21.67	10.10	6.29
17	E2a_E4c	KnownJunction	0	2.94	1.63	0.88	0.00	2.79	0.00	2.24
18	E2a_E4d	KnownJunction	1	7.83	29.19	8.36	5.36	5.86	11.31	4.49
19	ER3a	ExonRegion	0	0.00	0.00	0.40	0.51	0.00	0.00	1.20
20	ER4a	ExonRegion	0	0.54	0.00	1.47	0.51	4.91	0.00	1.03
21	ER4b	ExonRegion	0	1.14	0.00	2.52	1.50	6.27	0.68	0.76
22	E4_Da	KnownBoundary	0	0.72	0.00	0.00	1.41	3.27	0.00	1.20
23	E4a_E4d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER4c	ExonRegion	0	8.82	5.47	8.16	4.76	9.66	4.37	5.42
25	E4_Ac	KnownBoundary	0	3.87	0.00	2.18	1.33	9.31	0.00	0.80
26	ER4d	ExonRegion	0	9.96	4.24	11.82	4.48	17.78	2.45	10.41
27	E4_Ad	KnownBoundary	0	10.43	4.18	16.40	5.85	14.96	4.90	11.64
28	ER4e	ExonRegion	0	32.98	31.31	43.08	17.70	65.70	20.15	19.63
29	E4b_E5a	KnownJunction	0	2.60	8.70	1.65	2.98	14.11	5.92	8.04
30	E4b_E6a	KnownJunction	0	27.94	22.59	43.56	10.05	84.97	19.83	16.21
31	ER5a	ExonRegion	1	5.15	11.49	4.78	2.33	13.93	6.60	5.59
32	E5a_E6a	KnownJunction	0	9.56	8.88	6.87	1.68	15.88	9.65	7.50
33	ER6a	ExonRegion	0	43.72	36.61	65.81	21.41	87.42	32.63	30.63
34	E6a_E7a	KnownJunction	0	32.61	34.63	42.08	17.69	92.33	27.55	24.42
35	ER7a	ExonRegion	0	45.84	53.71	56.67	22.15	106.47	28.36	27.78
36	E7a_E8a	KnownJunction	1	41.84	49.36	45.21	9.10	111.99	11.71	18.76
37	E7a_E9a	KnownJunction	0	4.67	7.51	5.10	4.90	4.47	8.31	1.78
38	ER8a	ExonRegion	1	51.44	47.31	56.28	20.71	118.94	11.14	23.47
39	E8_Da	NovelBoundary	0	10.11	4.36	3.55	1.68	25.63	0.00	4.47
40	E8a_E9a	KnownJunction	0	44.80	40.88	47.78	17.93	89.93	13.78	16.68
41	I8	Intron	0	2.79	2.22	1.74	0.30	11.10	0.15	2.95
42	I8_SR1	SilentIntronRegion	0	3.28	2.61	2.08	0.37	11.76	0.11	2.83
43	I8_AR2	ActiveIntronRegion	0	1.74	1.55	1.12	0.00	10.07	0.23	3.24
44	ER9a	ExonRegion	0	33.94	44.62	52.87	27.45	89.88	17.33	31.36
45	E9a_E10a	KnownJunction	0	22.53	35.86	50.96	22.57	83.11	15.62	35.64
46	I9_AR4	ActiveIntronRegion	0	1.47	2.82	5.45	0.00	11.41	0.00	1.96
47	ER10a	ExonRegion	0	26.57	30.81	46.47	18.21	80.04	15.69	30.69
48	E10_Da	KnownBoundary	1	6.59	7.70	18.74	7.40	17.77	4.50	13.80
49	E10a_E11a	KnownJunction	1	7.28	6.73	27.94	7.10	33.50	11.74	18.07
50	ER10b	ExonRegion	1	4.36	5.29	12.90	4.01	16.07	4.77	8.42
51	ER10c	ExonRegion	0	1.99	1.62	1.69	1.45	4.32	1.12	2.08
52	I10	Intron	0	8.85	2.05	7.93	1.02	14.96	0.43	3.03
53	I10_AR2	ActiveIntronRegion	0	3.07	1.21	4.74	0.00	14.17	0.00	1.69
54	I10_SR1	SilentIntronRegion	0	6.45	2.43	8.49	0.00	18.19	0.00	2.52
55	I10_AR3	ActiveIntronRegion	0	24.21	6.93	27.17	4.78	46.50	2.56	6.76
56	E11_Aa	NovelBoundary	0	9.60	0.00	4.54	0.00	10.58	0.00	3.97
57	ER11a	ExonRegion	0	24.68	3.60	48.61	8.47	63.82	9.08	19.83
58	E11a_E12a	KnownJunction	1	44.33	7.33	62.08	11.51	75.52	3.00	17.90
59	ER12a	ExonRegion	0	38.28	9.90	53.40	11.55	70.03	4.42	19.47
60	E12a_E13a	KnownJunction	0	21.43	8.51	33.80	13.41	57.59	9.03	18.32
61	I12_AR1	ActiveIntronRegion	0	7.81	3.51	8.91	2.77	7.53	0.35	3.17
62	I12_SR2	SilentIntronRegion	0	8.06	4.97	9.65	1.57	8.57	1.24	6.27
63	I12_AR2	ActiveIntronRegion	0	4.20	4.41	6.92	1.26	11.24	0.00	3.61
64	ER13a	ExonRegion	0	38.16	11.67	54.62	12.42	78.29	9.70	23.53
65	E13_Da	NovelBoundary	0	19.38	3.60	10.68	0.00	32.67	5.68	5.16
66	E13a_E14a	KnownJunction	0	14.37	7.43	30.92	4.17	43.04	5.47	14.69
67	I13	Intron	0	8.24	2.01	4.36	0.78	16.30	0.76	2.94
68	I13_AR1	ActiveIntronRegion	0	11.20	2.67	5.89	2.08	22.14	0.67	5.24
69	I13_AR2	ActiveIntronRegion	0	9.68	2.41	5.16	0.00	18.14	1.23	2.33
70	ER14a	ExonRegion	0	22.39	12.42	30.90	7.78	57.94	10.74	23.95
71	E14_Da	KnownBoundary	0	4.94	2.78	2.54	0.00	12.31	1.10	1.56
72	E14a_E14b	KnownJunction	0	19.68	15.16	20.06	10.81	54.29	11.93	21.12
73	ER14b	ExonRegion	0	6.59	1.18	5.01	0.08	20.13	0.74	5.00
74	E14_Ab	KnownBoundary	0	7.28	4.78	7.44	0.00	27.87	0.00	2.59
75	ER14c	ExonRegion	0	23.92	15.07	19.01	11.91	55.10	11.46	13.48
76	ER14d	ExonRegion	0	1.54	1.21	1.35	2.49	1.62	0.00	0.00