Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	APP	Gene	0	2273.90	1964.52	1566.43	1776.20	2095.60	823.18	5685.90
2	355226	Transcript	0	0.06	1.37	0.05	0.00	0.00	0.00	0.00
3	359726	Transcript	1	4.41	9.90	6.96	29.31	9.54	4.53	8.74
4	354192	Transcript	0	2.67	6.62	0.00	4.28	0.00	0.00	3.34
5	358918	Transcript	0	112.61	48.50	157.64	64.83	1.01	88.17	237.10
6	357903	Transcript	0	1003.58	1673.83	567.21	1182.66	554.40	406.79	1637.87
7	348990	Transcript	0	0	0	0	0	0	0	0
8	346798	Transcript	0	0	0	0	0	0	0	0
9	ER1a	ExonRegion	0	215.77	471.65	112.73	364.30	170.92	171.22	618.15
10	E1a_E2a	KnownJunction	0	1025.88	1512.58	634.28	1214.85	548.96	532.14	3499.16
11	E1a_E3a	KnownJunction	0	2.67	6.62	0.00	4.28	0.00	0.00	3.34
12	ER2a	ExonRegion	0	1717.42	2606.17	1225.43	1994.40	1743.44	1040.90	5965.20
13	E2a_E3a	KnownJunction	0	1744.63	2982.86	1346.34	2304.02	1629.33	1173.11	5789.74
14	ER3a	ExonRegion	0	2119.99	3269.39	1694.35	2636.19	2012.08	1305.74	7868.85
15	E3a_E4a	KnownJunction	0	2135.43	3147.48	1690.27	2635.88	2167.34	1033.05	7000.67
16	ER4a	ExonRegion	0	2139.82	3253.17	1774.77	2704.55	2321.44	1127.59	7764.88
17	E4a_E5a	KnownJunction	0	1862.26	3401.60	1588.51	2714.74	2511.17	1170.56	7560.54
18	ER5a	ExonRegion	0	1946.65	3406.52	1822.24	2763.46	2492.21	1171.38	8337.40
19	E5a_E6a	KnownJunction	0	1737.22	3122.60	1626.69	2588.61	2106.61	1072.02	7642.22
20	ER6a	ExonRegion	0	1749.45	3105.95	1544.78	2641.48	1978.25	1065.59	7049.36
21	E6a_E7a	KnownJunction	0	0.00	2.73	0.00	0.00	0.00	0.00	0.00
22	E6a_E8a	KnownJunction	0	1723.67	2532.20	1279.15	2234.45	1107.20	869.87	5466.36
23	E6a_E9a	KnownJunction	0	4.41	9.90	6.96	29.31	9.54	4.53	8.74
24	E6a_E10a	KnownJunction	0	49.60	105.77	59.77	157.51	129.76	56.31	107.83
25	ER7a	ExonRegion	0	0.12	0.00	0.10	0.00	0.00	0.00	0.00
26	ER8a	ExonRegion	0	1676.03	2569.15	1279.68	2215.47	1781.47	855.14	5377.07
27	E8a_E9a	KnownJunction	1	840.37	1065.20	910.35	1120.33	1299.28	572.71	4640.96
28	E8a_E10a	KnownJunction	0	1003.58	1673.83	567.21	1182.66	554.40	406.79	1637.87
29	ER9a	ExonRegion	1	870.98	1103.47	1026.26	1163.02	1269.65	647.33	4791.10
30	E9a_E10a	KnownJunction	1	800.83	1008.82	958.06	1086.35	1068.68	607.15	4340.66
31	ER10a	ExonRegion	0	2175.85	2970.68	1816.25	2678.19	2324.13	1067.08	7093.10
32	E10a_E11a	KnownJunction	0	2205.79	3340.65	1836.51	2918.52	2386.78	1121.76	7614.60
33	E10a_E13a	NovelJunction	1	3.84	5.65	5.89	35.54	3.32	35.27	0.00
34	ER11a	ExonRegion	0	3600.71	3543.24	2423.00	3123.03	4169.33	1148.15	9050.34
35	E11a_E12a	KnownJunction	0	5649.49	3543.18	3114.93	3190.95	3798.81	1240.56	9462.64
36	ER12a	ExonRegion	0	3100.45	2906.24	2035.81	2702.54	2326.13	1078.59	8071.56
37	E12a_E13a	KnownJunction	0	4166.28	2609.99	2282.10	2483.22	2089.42	1010.59	8140.29
38	ER13a	ExonRegion	0	3500.10	2667.52	2191.31	2560.03	3691.52	1067.93	8197.26
39	E13a_E14a	KnownJunction	0	2150.55	2419.60	1613.95	2325.55	2117.15	969.29	6385.34
40	ER14a	ExonRegion	0	2130.94	2717.38	1626.01	2665.92	2375.76	1087.86	7059.49
41	E14a_E15a	KnownJunction	0	2594.98	2740.77	1881.48	2822.73	3120.52	1150.09	7681.17
42	ER15a	ExonRegion	0	2819.47	2714.99	2004.10	2674.61	2808.14	1278.51	7814.62
43	E15a_E16a	KnownJunction	0	3584.86	2340.15	2088.97	2289.69	3700.53	1106.24	7126.79
44	E15a_E17a	KnownJunction	0	112.61	48.50	157.64	64.83	1.01	88.17	237.10
45	ER16a	ExonRegion	0	2971.90	2279.48	1948.13	2205.02	3097.79	1123.13	6875.19
46	E16a_E17a	KnownJunction	0	2095.84	2042.21	1569.74	2036.76	2305.75	1028.60	5820.13
47	ER17a	ExonRegion	0	3541.49	2818.12	2349.12	2782.18	4364.10	1405.02	9270.18
48	E17a_E18a	KnownJunction	0	5682.12	3281.96	2893.44	3234.98	7435.30	1532.17	11541.70
49	ER18a	ExonRegion	0	4160.35	3197.43	2526.48	3240.44	3345.01	1557.83	11522.76
50	E18a_E19a	KnownJunction	0	3550.00	2052.64	1803.30	1968.76	3086.91	888.73	6726.55
51	ER19a	ExonRegion	0	2429.76	712.96	1486.07	703.67	1770.95	431.46	3459.09
52	IG43_SR2	SilentIntergenicRegion	0	14.26	2.35	7.92	3.04	1.41	1.43	3.76
53	IG43_AR1	ActiveIntergenicRegion	0	10.86	2.09	7.46	2.07	0.34	2.64	2.50