Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 GDAP1L1 Gene 0 0.34 0.11 1.77 0.69 25.44 1.77 1.27 2 372952 Transcript 0 0.00 0.00 0.00 0.00 0.29 0.00 0.00 3 262604 Transcript 0 0.00 0.00 0.78 0.00 0.00 0.00 0.00 4 372946 Transcript 0 0.00 0.00 0.00 0.00 8.85 1.66 0.00 5 342560 Transcript 0 0 0 0 0 0 0 0 6 372947 Transcript 0 0.16 0.00 0.52 0.84 14.12 0.52 0.41 7 396831 Transcript 0 0.22 0.00 0.53 0.22 1.53 0.09 0.64 8 IG25_AR1 ActiveIntergenicRegion 0 4.60 11.53 8.30 31.83 3.19 33.89 0.82 9 IG25_AR7 ActiveIntergenicRegion 0 9.14 11.33 5.11 7.78 18.06 8.30 5.96 10 ER1a ExonRegion 0 0.82 0.00 0.56 0.00 8.71 1.26 0.00 11 E1_Ab KnownBoundary 0 0.87 0.00 1.52 0.00 41.06 5.09 0.00 12 ER1b ExonRegion 0 0.64 0.00 0.64 0.00 43.08 5.58 0.00 13 E1_Da KnownBoundary 0 0.00 0.00 0.56 0.00 5.76 1.21 0.00 14 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 2.14 0.00 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 2.17 0.00 0.00 16 ER1c ExonRegion 0 0.00 0.00 0.68 0.00 7.29 1.23 0.00 17 ER1d ExonRegion 0 0.00 0.00 0.20 0.00 4.46 0.42 0.00 18 E1_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1b_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1_Ad KnownBoundary 0 0.00 0.00 0.63 0.00 5.05 1.07 0.00 21 ER1e ExonRegion 0 0.00 0.00 0.68 0.00 6.48 2.21 0.00 22 ER1f ExonRegion 0 0.00 0.00 0.68 0.00 15.81 4.47 0.19 23 E1c_E3a KnownJunction 0 0.00 0.00 0.89 0.00 18.12 5.12 0.69 24 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.00 0.00 1.70 0.98 68.33 5.77 1.00 26 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 40.53 1.66 1.59 28 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 8.85 1.66 0.00 29 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.58 0.00 0.00 30 ER5a ExonRegion 0 0.00 0.00 0.00 1.77 35.10 1.19 1.17 31 E5_Da KnownBoundary 0 0.00 0.00 0.00 1.68 23.84 0.00 0.60 32 E5a_E5b KnownJunction 0 0.00 0.00 0.00 1.68 8.76 0.00 0.00 33 E5b_E5c KnownJunction 0 0.00 0.00 0.00 1.68 26.53 0.00 0.00 34 E5_Ac KnownBoundary 0 0.00 0.00 1.18 1.68 43.39 0.00 0.00 35 ER5b ExonRegion 0 0.00 0.00 0.00 2.49 28.61 0.00 0.67 36 ER5c ExonRegion 0 0.00 0.00 0.61 2.49 37.58 0.00 0.27 37 ER5d ExonRegion 0 0.00 0.00 1.35 2.49 46.57 0.00 0.00 38 ER5e ExonRegion 0 0.00 0.00 2.06 2.45 83.25 3.36 0.46 39 E5c_E6a KnownJunction 0 0.00 0.00 2.73 3.09 94.63 0.00 0.00 40 ER6a ExonRegion 0 0.00 0.00 3.84 3.31 88.29 1.25 0.00 41 E6a_E7a KnownJunction 0 0.00 0.00 4.99 1.19 83.45 2.73 0.00 42 ER7a ExonRegion 0 0.26 0.00 4.06 1.00 92.63 0.92 1.25 43 E7_Da KnownBoundary 0 0.00 0.00 0.73 0.00 37.92 1.53 0.00 44 E7a_E7b KnownJunction 0 0.97 0.00 1.60 1.68 47.30 1.47 1.69 45 E7_Ab KnownBoundary 0 1.00 0.00 1.98 0.00 25.54 0.00 0.83 46 ER7b ExonRegion 0 0.77 0.00 5.87 1.25 88.54 1.23 2.02 47 E7_Db KnownBoundary 0 0.00 0.00 1.71 0.00 0.00 0.00 0.00 48 E7b_E8a KnownJunction 0 0.00 0.00 8.16 0.00 73.01 3.75 0.89 49 ER7c ExonRegion 0 0.77 0.00 7.93 1.21 76.41 1.82 2.02 50 ER7d ExonRegion 0 0.44 0.00 1.06 0.44 3.06 0.17 1.28 51 ER8a ExonRegion 0 0.00 0.00 7.28 0.00 84.22 3.98 1.62 52 E8_Da KnownBoundary 0 0.00 0.00 5.78 0.00 39.56 4.40 0.00 53 E8a_E8b KnownJunction 0 0.00 0.00 1.55 0.00 0.00 1.66 0.79 54 E8_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 10.26 1.39 2.38 55 ER8b ExonRegion 0 0.00 0.00 5.69 0.00 75.15 4.90 2.02 56 ER8c ExonRegion 0 0.00 0.00 2.34 1.69 58.70 6.79 2.15 57 E8_Db KnownBoundary 0 0.00 0.00 4.68 1.65 103.97 7.96 3.08 58 E8b_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER8d ExonRegion 0 0.12 0.00 0.64 0.92 36.24 4.72 1.78 60 E8_Dc KnownBoundary 0 0.95 0.00 0.00 0.00 22.11 2.76 1.50 61 ER8e ExonRegion 0 0.55 0.24 1.35 0.00 11.51 1.18 2.19 62 E8_Ac KnownBoundary 0 0.00 1.37 3.23 0.00 15.77 0.00 4.80 63 ER8f ExonRegion 0 0.65 0.64 3.53 0.00 15.73 1.23 3.75 64 E8_Dd KnownBoundary 0 1.03 0.00 2.44 0.00 14.11 1.66 0.89 65 E8d_E8d KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 66 ER8g ExonRegion 0 0.34 0.93 1.79 0.00 11.35 0.68 0.91 67 E8_Ad KnownBoundary 0 0.00 0.00 1.75 0.00 7.49 1.37 1.78 68 ER8h ExonRegion 0 0.05 0.00 2.97 0.00 12.87 1.23 1.62 69 E8_De KnownBoundary 0 0.00 0.00 3.23 0.00 13.85 0.00 0.89 70 ER8i ExonRegion 0 0.48 0.30 2.73 0.78 20.09 1.55 1.47 71 IG26_AR2 ActiveIntergenicRegion 0 19.91 6.49 32.02 4.52 14.12 4.57 36.27 72 IG26_AR3 ActiveIntergenicRegion 0 31.09 9.52 51.56 3.18 21.11 2.52 34.38 73 IG26_SR2 SilentIntergenicRegion 0 5.84 1.01 13.98 1.25 3.48 0.90 9.35 74 IG26_AR4 ActiveIntergenicRegion 0 14.93 3.77 28.40 1.01 7.95 1.66 19.97 75 IG26_AR6 ActiveIntergenicRegion 0 8.82 3.78 19.51 0.78 7.31 3.31 26.25