Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DLGAP4	Gene	0	138.59	196.79	95.48	186.52	71.05	196.61	111.81
2	373913	Transcript	0	0.00	0.00	0.00	2.15	1.40	6.14	0.00
3	373907	Transcript	0	0	0	0	0	0	0	0
4	401952	Transcript	0	0	0	0	0	0	0	0
5	339266	Transcript	0	0	0	0	0	0	0	0
6	341277	Transcript	1	54.71	75.83	16.45	38.37	110.78	34.17	77.01
7	340491	Transcript	0	151.17	266.17	143.36	295.74	25.86	262.81	133.17
8	ER1a	ExonRegion	0	0.00	0.00	0.00	0.99	0.12	0.78	0.00
9	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	1.60	0.99	3.62	0.00
10	ER2a	ExonRegion	0	0.00	0.00	0.00	3.87	3.10	14.01	0.00
11	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	7.02	4.22	21.47	0.00
12	ER2b	ExonRegion	0	0.00	0.73	0.41	6.07	4.10	31.13	0.00
13	E2a_E3a	KnownJunction	1	0.00	0.00	0.00	6.94	0.00	17.18	0.00
14	ER3a	ExonRegion	0	0.00	0.20	0.45	7.38	3.21	26.69	0.00
15	E3_Ab	KnownBoundary	0	0.00	1.10	1.29	11.51	5.21	45.75	0.00
16	ER3b	ExonRegion	0	0.16	1.10	0.73	4.03	10.71	22.57	0.05
17	E3a_E4a	KnownJunction	1	0.00	0.00	0.00	0.00	5.99	14.47	0.00
18	ER4a	ExonRegion	0	0.00	0.00	1.07	2.90	7.80	15.91	0.00
19	E4a_E5a	KnownJunction	1	0.00	0.00	0.00	1.68	5.83	22.97	0.00
20	ER5a	ExonRegion	0	0.07	2.29	2.31	3.51	10.73	34.87	0.00
21	E5a_E6a	KnownJunction	1	0.00	1.10	1.70	4.39	16.14	27.34	0.00
22	E5a_E7a	NovelJunction	1	0.00	0.00	0.00	0.00	2.21	9.86	0.00
23	ER6a	ExonRegion	0	0.77	0.26	1.57	4.57	17.80	24.74	0.00
24	E6a_E7a	KnownJunction	1	0.75	0.00	0.68	5.34	19.89	19.62	0.00
25	ER7a	ExonRegion	0	0.53	0.38	1.47	6.55	14.41	19.28	0.00
26	E7a_E10a	KnownJunction	1	0.00	0.00	0.00	7.91	23.58	25.75	0.00
27	ER8a	ExonRegion	1	32.70	41.93	9.77	23.64	65.20	20.19	46.25
28	E8a_E10a	KnownJunction	1	76.72	109.74	23.12	53.10	156.37	48.16	107.77
29	ER9a	ExonRegion	0	126.18	273.55	128.90	281.64	20.38	281.58	104.61
30	E9a_E10a	KnownJunction	0	176.16	258.80	157.82	309.84	31.35	244.04	161.73
31	I9_SR3	SilentIntronRegion	0	34.39	20.75	17.94	11.37	9.32	8.79	6.36
32	I9_AR4	ActiveIntronRegion	1	37.94	26.59	9.28	5.66	9.91	15.44	11.48
33	ER10a	ExonRegion	0	150.99	367.02	115.84	295.75	123.79	280.41	207.41
34	E10_Da	NovelBoundary	1	35.03	36.89	39.20	33.38	4.38	18.09	13.30
35	E10a_E11a	KnownJunction	0	3.76	2.68	2.21	5.47	0.00	12.78	1.78
36	E10a_E12a	KnownJunction	0	190.10	343.03	130.01	256.53	170.98	336.44	321.68
37	I10	Intron	1	54.14	62.04	50.36	41.59	9.45	25.18	11.04
38	I10_AR1	ActiveIntronRegion	1	33.63	54.67	30.44	30.24	6.51	19.16	8.54
39	I10_SR1	SilentIntronRegion	1	33.92	76.80	39.01	41.38	5.92	26.71	10.11
40	I10_AR2	ActiveIntronRegion	1	64.62	64.84	60.15	46.89	10.99	27.91	12.25
41	E11_Aa	NovelBoundary	1	21.21	29.32	26.48	24.68	1.18	18.68	2.24
42	ER11a	ExonRegion	0	8.00	7.53	5.92	2.42	1.09	11.89	1.27
43	E11_Da	NovelBoundary	1	101.42	62.97	75.49	43.21	22.08	26.59	14.35
44	E11a_E12a	NovelJunction	1	7.53	0.00	34.09	13.57	0.90	12.11	0.00
45	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.99	0.00
46	E12_Aa	NovelBoundary	1	59.00	44.87	40.58	46.33	13.81	39.66	13.21
47	ER12a	ExonRegion	0	176.49	478.86	158.77	355.90	135.63	385.24	297.71
48	E12a_E13a	KnownJunction	0	174.74	506.70	154.80	404.82	112.57	386.64	273.70
49	ER13a	ExonRegion	0	193.98	451.53	132.65	366.87	118.82	379.29	228.39
50	E13a_E14a	KnownJunction	0	276.99	487.20	159.57	335.71	208.40	412.53	235.94
51	E13a_E15a	NovelJunction	0	1.87	13.00	2.33	14.22	0.00	25.57	0.63
52	ER14a	ExonRegion	0	677.48	617.19	344.40	501.58	292.45	554.12	401.29
53	E14a_E15a	KnownJunction	0	893.43	697.40	437.63	593.43	362.87	621.54	435.92
54	ER15a	ExonRegion	0	457.09	545.16	254.07	420.49	190.29	456.00	271.78
55	E15a_E16a	KnownJunction	1	433.50	459.75	214.22	298.90	253.51	386.00	174.27
56	ER16a	ExonRegion	1	512.47	377.89	276.97	349.84	200.35	368.62	205.46
57	E16_Da	KnownBoundary	0	569.91	324.22	329.71	347.88	321.66	353.30	220.66
58	ER16b	ExonRegion	0	168.47	204.64	119.67	230.76	102.82	234.54	156.62
59	ER16c	ExonRegion	0	1.54	1.21	0.00	0.00	0.40	4.90	2.02