Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MUC1	Gene	0	792.19	248.43	26.07	10.46	15.53	17.26	14.38
2	368395	Transcript	1	275.77	248.46	2.21	5.14	5.56	13.75	8.60
3	342482	Transcript	1	1.52	14.24	0.00	0.00	0.00	0.00	0.00
4	368393	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	343256	Transcript	1	27.82	21.33	1.51	1.41	1.18	2.33	0.00
6	338684	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	368390	Transcript	0	0	0	0	0	0	0	0
8	328530	Transcript	0	386.86	391.79	5.31	8.92	4.09	24.16	12.76
9	368392	Transcript	0	0	0	0	0	0	0	0
10	368396	Transcript	0	0	0	0	0	0	0	0
11	368398	Transcript	0	4.04	0.00	0.00	0.00	0.00	0.00	0.00
12	337604	Transcript	0	0	0	0	0	0	0	0
13	368389	Transcript	0	0	0	0	0	0	0	0
14	ER1a	ExonRegion	0	1.87	1.74	0.68	0.00	1.85	0.70	0.00
15	ER1b	ExonRegion	0	240.39	70.55	7.94	2.32	6.94	4.35	1.93
16	E1_Ac	KnownBoundary	0	510.34	153.87	18.90	5.53	9.75	10.43	5.79
17	ER1c	ExonRegion	0	367.93	142.11	18.11	7.22	4.34	10.44	6.97
18	E1a_E2a	KnownJunction	1	73.54	34.68	8.75	0.00	2.17	2.89	6.03
19	E1a_E2b	KnownJunction	1	70.67	95.84	5.00	7.29	0.95	12.70	4.40
20	E2_Ab	NovelBoundary	1	63.67	43.45	8.38	0.00	4.08	3.11	7.42
21	ER2a	ExonRegion	0	67.13	40.91	8.10	0.22	2.83	3.42	5.08
22	ER2b	ExonRegion	1	488.49	301.99	27.44	12.56	11.41	23.72	19.67
23	E2_Da	KnownBoundary	1	810.95	426.96	39.12	17.72	10.67	28.33	22.26
24	E2a_E3c	KnownJunction	0	1.77	5.70	0.00	0.00	0.00	2.41	0.00
25	E2a_E3d	KnownJunction	0	4.19	3.52	0.00	1.27	2.01	2.33	0.00
26	E2a_E3e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E2a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E2a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER2c	ExonRegion	1	346.15	300.50	17.05	10.54	5.52	17.78	14.56
30	E2b_E3a	KnownJunction	1	743.39	758.72	10.48	17.42	7.58	46.85	24.71
31	E2c_E3b	KnownJunction	1	632.75	625.31	5.49	14.33	10.72	32.21	21.87
32	ER2d	ExonRegion	1	443.11	363.16	2.66	6.23	9.66	22.07	11.85
33	E3_Ab	NovelBoundary	1	325.49	238.94	3.43	0.00	2.14	9.17	6.35
34	ER3a	ExonRegion	0	30.33	24.86	0.14	0.42	0.59	1.47	0.81
35	ER3b	ExonRegion	0	820.69	303.58	24.25	11.17	11.25	20.04	16.38
36	E3_Ac	KnownBoundary	1	998.69	297.05	35.72	4.25	7.54	16.88	19.19
37	ER3c	ExonRegion	0	1695.04	342.14	63.55	11.55	20.67	29.95	21.72
38	E3_Ad	KnownBoundary	0	1402.00	213.82	60.69	9.35	28.54	22.46	15.48
39	E3_Ae	KnownBoundary	0	1024.08	190.36	32.45	10.29	26.95	12.57	12.25
40	ER3d	ExonRegion	0	1918.22	321.30	73.09	16.74	35.63	30.65	21.84
41	ER3e	ExonRegion	0	1561.82	260.52	55.14	11.17	31.83	18.77	17.99
42	E3a_E4a	KnownJunction	0	1424.62	172.47	41.33	5.61	27.89	11.74	14.22
43	E3a_E5a	KnownJunction	0	4.04	0.00	0.00	0.00	0.00	0.00	0.00
44	E3a_E6a	NovelJunction	1	37.67	59.82	1.61	1.16	0.00	8.47	1.36
45	E3a_E6b	KnownJunction	1	1.52	14.24	0.00	0.00	0.00	0.00	0.00
46	E3a_E7a	KnownJunction	0	0.00	5.57	0.00	1.08	0.00	1.47	0.00
47	E4_Ab	NovelBoundary	0	732.55	76.13	21.04	4.44	14.34	4.40	5.83
48	ER4a	ExonRegion	0	1414.54	186.36	47.15	6.36	26.64	13.85	13.36
49	ER4b	ExonRegion	0	1340.07	189.04	45.02	7.67	25.95	10.55	14.08
50	E4a_E5a	KnownJunction	0	1079.92	170.21	40.47	6.77	24.67	7.75	11.49
51	E4a_E6a	KnownJunction	1	27.82	21.33	1.51	1.41	1.18	2.33	0.00
52	ER5a	ExonRegion	0	1381.98	221.20	45.98	10.77	31.67	15.57	17.26
53	E5a_E6a	KnownJunction	0	2046.50	212.22	57.31	8.53	29.81	19.27	22.00
54	ER6a	ExonRegion	0	1822.45	239.44	50.97	13.23	28.20	20.17	27.86
55	E6_Ab	KnownBoundary	0	1566.77	219.97	42.12	17.28	23.72	23.37	29.85
56	ER6b	ExonRegion	0	1398.88	313.43	35.74	14.56	30.58	22.47	25.32
57	E6_Da	NovelBoundary	1	581.08	4.83	10.56	0.00	0.00	0.00	0.00
58	E6b_E7a	KnownJunction	0	1422.50	312.79	28.80	11.95	34.10	20.48	23.10
59	ER6c	ExonRegion	0	1391.89	325.18	29.80	10.39	33.47	23.29	24.74
60	ER7a	ExonRegion	0	1296.18	356.41	36.79	18.00	33.55	26.56	24.01
61	E7a_E8a	KnownJunction	0	1077.89	307.32	27.96	17.31	14.68	22.78	19.35
62	ER8a	ExonRegion	0	420.77	267.49	13.14	18.13	15.20	19.49	9.13
63	E8_Da	KnownBoundary	0	527.99	221.94	17.65	5.91	9.59	21.12	7.98
64	ER8b	ExonRegion	0	412.49	131.68	10.48	5.07	8.11	8.85	4.33
65	ER8c	ExonRegion	0	25.36	3.64	0.00	0.00	0.00	0.00	0.67
66	IG49	Intergenic	0	11.13	3.45	0.54	0.00	0.19	0.00	0.00
67	IG49_SR1	SilentIntergenicRegion	0	11.16	3.46	0.54	0.00	0.19	0.00	0.00