Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	YY1AP1	Gene	0	292.94	449.84	305.97	606.61	172.05	842.38	178.13
2	295566	Transcript	0	0.00	3.26	2.28	3.36	2.90	1.39	0.00
3	368330	Transcript	0	1.69	5.65	9.48	8.15	4.61	7.21	1.78
4	407221	Transcript	0	0	0	0	0	0	0	0
5	359205	Transcript	0	1.79	36.46	6.48	31.40	2.31	58.50	2.35
6	355499	Transcript	0	0.26	1.21	0.00	1.25	0.00	0.00	0.22
7	404643	Transcript	0	0	0	0	0	0	0	0
8	368339	Transcript	0	0	0	0	0	0	0	0
9	361140	Transcript	0	23.57	36.75	20.89	70.49	8.18	83.08	4.56
10	354691	Transcript	0	0	0	0	0	0	0	0
11	361831	Transcript	0	9.60	12.34	3.98	6.41	2.42	6.02	2.53
12	347088	Transcript	0	14.34	16.79	19.57	28.20	13.83	21.20	11.71
13	405763	Transcript	1	56.68	32.87	48.40	40.20	29.56	35.77	12.07
14	368340	Transcript	0	0	0	0	0	0	0	0
15	311573	Transcript	0	0	0	0	0	0	0	0
16	ER1a	ExonRegion	0	3.02	4.64	4.50	5.39	5.41	3.33	0.77
17	E1a_E3d	KnownJunction	0	0.00	3.26	2.28	3.36	2.90	1.39	0.00
18	E1a_E4a	KnownJunction	0	1.69	5.65	9.48	8.15	4.61	7.21	1.78
19	ER2a	ExonRegion	0	0.00	0.94	0.68	0.14	0.00	1.63	0.00
20	ER2b	ExonRegion	0	0.00	3.64	0.68	2.77	0.00	2.45	0.00
21	ER2c	ExonRegion	0	4.47	7.63	5.73	12.70	5.42	6.73	4.17
22	E2_Ad	KnownBoundary	0	0.98	2.76	1.55	9.64	5.69	3.32	0.83
23	E2_Ae	KnownBoundary	0	12.72	22.91	21.80	28.28	24.30	17.42	15.45
24	ER2d	ExonRegion	0	15.81	30.72	25.16	37.41	36.10	21.19	18.41
25	ER2e	ExonRegion	0	33.26	80.40	50.47	100.46	70.58	87.77	44.92
26	E2a_E3d	KnownJunction	0	35.17	126.10	66.99	139.00	57.86	156.75	64.35
27	E2a_E4a	KnownJunction	0	14.34	16.79	19.57	28.20	13.83	21.20	11.71
28	ER3a	ExonRegion	0	2.75	6.88	2.43	5.92	0.00	9.91	1.97
29	ER3b	ExonRegion	0	23.25	43.53	14.28	52.21	1.96	69.06	8.46
30	E3_Ac	KnownBoundary	0	43.91	75.16	45.48	104.33	4.26	182.61	13.33
31	ER3c	ExonRegion	0	36.93	79.85	38.27	136.41	6.12	213.36	13.28
32	E3_Ad	KnownBoundary	0	44.63	91.11	47.48	121.94	16.00	219.57	14.22
33	ER3d	ExonRegion	0	63.95	256.66	81.75	341.88	18.03	494.98	50.75
34	E3a_E4a	KnownJunction	0	93.03	370.90	122.65	379.52	27.02	607.26	78.12
35	E3a_E6a	KnownJunction	0	1.79	36.46	6.48	31.40	2.31	58.50	2.35
36	E3a_E7a	NovelJunction	1	0.60	1.55	1.29	9.97	0.00	24.98	0.00
37	I3_AR3	ActiveIntronRegion	0	62.70	23.18	28.12	12.97	13.02	6.38	9.71
38	ER4a	ExonRegion	0	142.99	545.86	233.00	578.62	83.65	841.87	148.03
39	E4_Da	KnownBoundary	0	53.86	30.79	23.98	15.17	10.12	14.04	7.50
40	E4a_E5a	KnownJunction	0	0.00	5.96	0.60	2.93	1.18	5.60	1.50
41	E4a_E6a	KnownJunction	0	107.88	439.81	202.58	502.57	89.98	737.23	139.59
42	ER4b	ExonRegion	0	11.68	18.12	9.14	7.12	8.41	13.09	4.52
43	E4b_E6a	KnownJunction	0	1.03	8.30	0.57	2.98	1.08	11.98	2.29
44	ER5a	ExonRegion	0	23.21	15.72	10.32	5.62	5.23	7.89	4.71
45	E5_Da	NovelBoundary	1	144.62	49.29	81.75	14.71	45.41	40.63	27.49
46	E5a_E6a	KnownJunction	0	5.59	15.34	1.01	10.67	0.85	4.58	1.36
47	I5	Intron	0	75.60	21.79	45.23	13.91	7.43	12.51	12.09
48	I5_SR1	SilentIntronRegion	1	62.65	15.10	35.73	10.93	6.15	12.56	4.86
49	I5_AR1	ActiveIntronRegion	0	78.97	23.48	47.67	14.68	7.76	12.54	13.88
50	ER6a	ExonRegion	0	168.26	762.87	248.40	820.71	183.70	1156.04	193.91
51	E6a_E7a	KnownJunction	0	207.19	923.18	323.36	1049.08	283.69	1452.92	286.93
52	ER7a	ExonRegion	0	369.54	1036.52	524.56	1113.29	281.07	1684.57	351.42
53	E7a_E8a	KnownJunction	0	490.25	1066.20	668.48	1162.86	353.40	1931.91	470.93
54	E7a_E9a	NovelJunction	0	6.14	23.49	11.73	35.65	0.00	64.51	4.07
55	ER8a	ExonRegion	0	397.33	952.02	554.04	1081.30	342.58	1545.46	365.61
56	E8a_E9a	KnownJunction	0	324.45	810.24	439.39	916.65	285.00	1204.65	288.19
57	E8a_E9b	KnownJunction	0	23.57	36.75	20.89	70.49	8.18	83.08	4.56
58	E8a_E10a	NovelJunction	1	2.30	6.96	5.52	21.24	1.78	35.83	0.89
59	E9_Ab	NovelBoundary	1	168.59	26.80	244.11	45.54	4.50	58.24	8.07
60	ER9a	ExonRegion	0	319.82	831.69	440.57	927.24	270.65	1287.79	294.26
61	ER9b	ExonRegion	0	374.62	782.40	539.95	960.27	339.38	1236.82	321.73
62	E9a_E10a	KnownJunction	0	387.07	717.50	551.27	940.79	362.51	1179.38	298.11
63	I9_AR2	ActiveIntronRegion	1	65.81	12.57	37.56	16.23	5.93	11.45	5.64
64	E10_Aa	NovelBoundary	1	81.01	23.88	62.90	53.26	9.20	46.42	9.36
65	ER10a	ExonRegion	0	499.98	871.20	636.29	1116.42	250.86	1467.86	312.79
66	E10a_E11a	KnownJunction	0	149.49	366.72	229.87	431.21	93.16	730.94	88.55
67	E10a_E11b	KnownJunction	0	246.18	321.46	289.12	429.45	129.14	521.26	196.41
68	E10a_E12a	NovelJunction	0	11.42	29.29	16.31	60.60	0.97	94.52	2.24
69	ER11a	ExonRegion	0	275.53	468.16	385.82	690.24	223.12	960.38	157.62
70	E11_Ab	KnownBoundary	0	458.57	535.44	571.95	861.66	576.99	1019.57	259.91
71	ER11b	ExonRegion	0	389.98	631.86	489.45	775.82	264.78	1066.35	277.83
72	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER12a	ExonRegion	0	247.82	442.47	372.10	618.37	187.65	937.21	220.82
74	E12_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
75	E12a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	ER12b	ExonRegion	1	110.60	58.87	94.38	74.48	59.12	61.62	22.17
77	E12_Ab	KnownBoundary	1	98.85	78.42	80.13	83.49	83.31	48.27	18.76
78	ER12c	ExonRegion	0	575.05	813.70	622.74	1008.77	287.05	1518.32	359.16
79	E12_Db	KnownBoundary	0	682.85	1000.99	755.81	1153.51	344.27	1725.26	446.05
80	ER12d	ExonRegion	0	416.48	465.50	343.91	745.67	212.30	1017.42	205.13
81	ER12e	ExonRegion	0	5.55	5.67	2.03	4.02	3.15	4.09	1.35
82	ER12f	ExonRegion	0	0.26	1.21	0.00	1.25	0.00	0.00	0.22
83	IG15_AR3	ActiveIntergenicRegion	0	22.70	11.84	10.48	1.61	0.02	4.78	10.37