Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NOTCH2NL	Gene	0	116.58	96.03	65.18	94.57	16.57	99.96	175.84
2	362074	Transcript	0	0.05	6.24	0.00	0.25	0.11	0.82	0.99
3	344859	Transcript	0	70.02	29.92	41.96	40.17	6.65	33.46	83.96
4	369342	Transcript	0	0	0	0	0	0	0	0
5	320929	Transcript	0	0	0	0	0	0	0	0
6	369340	Transcript	1	34.54	25.01	13.14	31.80	1.52	30.30	7.17
7	ER1a	ExonRegion	0	0.05	6.24	0.00	0.25	0.11	0.82	0.99
8	ER1b	ExonRegion	0	1.84	16.85	0.16	6.86	1.76	8.42	3.50
9	E1_Ac	KnownBoundary	0	21.18	65.94	10.46	55.65	10.14	47.01	33.72
10	ER1c	ExonRegion	0	15.19	62.46	8.24	54.31	3.83	54.19	30.25
11	E1a_E3a	NovelJunction	0	1.67	19.20	2.51	22.54	0.00	19.32	2.31
12	E1a_E4a	KnownJunction	0	68.28	216.08	40.01	186.66	12.77	168.60	168.35
13	I1	Intron	1	28.63	9.23	11.90	5.03	0.47	5.10	2.49
14	I1_SR2	SilentIntronRegion	1	35.27	14.24	17.36	8.91	0.65	7.51	2.11
15	I1_AR3	ActiveIntronRegion	1	28.77	31.79	18.38	12.18	0.00	21.33	3.64
16	I1_AR4	ActiveIntronRegion	1	18.50	24.90	15.69	7.48	0.00	11.85	1.69
17	I1_AR5	ActiveIntronRegion	1	42.17	24.78	17.11	8.52	0.45	15.45	3.41
18	I1_SR3	SilentIntronRegion	1	43.70	9.85	17.06	5.13	0.51	7.49	3.44
19	I1_AR8	ActiveIntronRegion	1	30.96	16.26	13.66	7.29	0.26	4.52	2.54
20	I1_SR4	SilentIntronRegion	1	28.22	7.15	12.06	5.75	0.48	3.33	1.87
21	E2_Aa	NovelBoundary	1	49.70	16.18	19.18	7.78	1.18	6.81	11.54
22	ER2a	ExonRegion	0	20.09	5.26	7.09	2.73	0.44	5.34	5.04
23	E2_Da	NovelBoundary	1	55.31	24.70	25.45	5.31	0.97	13.75	13.83
24	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.66
25	I2	Intron	1	23.44	8.26	7.44	3.82	0.18	5.04	3.05
26	I2_AR2	ActiveIntronRegion	0	30.02	11.00	10.71	5.49	0.16	9.12	5.16
27	I2_SR2	SilentIntronRegion	1	29.07	11.40	8.28	6.18	0.24	7.85	3.26
28	I2_AR3	ActiveIntronRegion	1	30.23	9.98	7.39	6.12	0.32	5.10	2.74
29	E3_Aa	NovelBoundary	1	69.55	38.59	22.88	17.45	2.12	28.11	5.04
30	ER3a	ExonRegion	1	95.30	66.31	36.27	76.33	3.31	76.37	19.45
31	E3_Da	NovelBoundary	1	65.16	24.20	27.58	8.45	0.00	18.49	3.74
32	E3a_E4a	KnownJunction	1	22.78	28.48	9.20	48.14	2.35	39.48	3.53
33	ER4a	ExonRegion	0	146.57	228.23	90.59	220.16	27.14	199.45	234.92
34	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER5a	ExonRegion	0	222.31	455.97	157.26	487.60	37.85	468.85	588.43
36	E5a_E6a	KnownJunction	1	218.82	450.77	166.01	563.96	56.73	505.93	698.07
37	ER6a	ExonRegion	0	227.79	537.27	162.31	610.40	41.85	572.77	676.52
38	E6a_E7a	KnownJunction	0	131.47	230.45	60.69	236.99	20.86	273.60	290.88
39	E6a_E8a	KnownJunction	1	63.22	60.69	54.28	99.94	5.39	34.68	30.81
40	ER7a	ExonRegion	0	144.74	172.52	80.69	195.04	22.78	215.84	277.05
41	E7_Da	KnownBoundary	1	32.96	43.51	27.15	38.33	9.01	37.22	111.57
42	ER7b	ExonRegion	0	111.80	49.05	57.64	38.33	15.40	51.48	135.17
43	E7_Db	NovelBoundary	0	90.88	60.71	47.61	45.40	13.05	78.36	182.87
44	I7	Intron	1	31.38	24.09	19.53	20.95	6.09	35.36	73.18
45	I7_AR1	ActiveIntronRegion	1	37.06	35.50	20.99	28.65	7.78	43.94	92.55
46	I7_SR1	SilentIntronRegion	1	41.82	57.01	13.69	44.18	5.32	69.18	93.77
47	I7_AR2	ActiveIntronRegion	1	30.58	23.37	19.43	19.92	5.84	34.63	72.05
48	I7_SR2	SilentIntronRegion	1	37.81	14.97	21.77	25.02	6.73	31.96	62.71
49	I7_AR3	ActiveIntronRegion	1	25.32	11.59	16.24	15.32	8.24	24.77	52.77
50	Ix	Intron	0	94.23	52.98	49.14	56.22	14.16	88.50	136.04
51	Ix_AR1	ActiveIntronRegion	0	94.48	53.12	49.27	56.36	14.19	88.74	136.40
52	ER8a	ExonRegion	0	64.25	43.12	49.41	88.13	7.30	45.36	45.35
53	E8_Da	NovelBoundary	0	142.97	81.68	98.25	119.53	17.11	129.20	143.87
54	E8b_E9a	KnownJunction	0	41.47	20.47	25.06	31.56	0.97	21.95	39.93
55	ER8b	ExonRegion	0	48.41	24.30	30.93	51.18	2.77	37.34	49.72
56	Ix	Intron	1	35.72	35.60	22.45	26.36	8.65	32.85	84.97
57	Ix_AR1	ActiveIntronRegion	0	23.17	15.41	15.73	10.71	7.62	11.93	48.80
58	Ix_SR1	SilentIntronRegion	0	47.29	42.10	25.26	34.28	9.46	42.36	100.94
59	Ix_AR2	ActiveIntronRegion	0	28.27	36.70	22.28	24.01	8.25	30.87	82.53
60	E9_Aa	NovelBoundary	1	50.60	44.66	17.09	31.15	7.63	32.56	119.01
61	ER9a	ExonRegion	0	120.18	44.98	69.89	37.78	16.22	41.09	162.22