Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TUFT1	Gene	0	271.20	592.62	66.43	183.24	43.58	186.05	165.29
2	368849	Transcript	1	27.13	75.57	6.29	26.36	0.18	21.44	76.26
3	368848	Transcript	0	0	0	0	0	0	0	0
4	353024	Transcript	0	4.46	18.50	0.88	2.90	0.00	8.92	0.00
5	392712	Transcript	0	6.69	65.87	2.41	15.07	1.80	24.41	7.57
6	ER1a	ExonRegion	0	173.24	493.17	40.47	190.92	34.92	148.28	157.47
7	E1a_E2a	KnownJunction	1	11.73	41.64	1.47	8.32	0.00	5.20	37.09
8	E1a_E3a	KnownJunction	0	12.78	133.75	2.59	31.34	2.10	41.46	8.03
9	E1a_E4a	KnownJunction	0	4.46	18.50	0.88	2.90	0.00	8.92	0.00
10	I1	Intron	0	50.49	22.55	15.34	14.42	2.45	13.10	4.19
11	I1_SR2	SilentIntronRegion	1	56.24	24.12	17.34	14.95	2.69	13.37	4.65
12	I1	Intron	1	54.24	25.75	13.32	14.17	1.88	14.26	3.05
13	I1_SR1	SilentIntronRegion	1	58.71	19.48	11.75	10.30	2.50	8.46	2.13
14	I1_AR1	ActiveIntronRegion	1	64.65	36.68	14.52	22.01	2.00	15.87	4.23
15	I1	Intron	1	82.46	24.41	16.94	12.10	1.54	13.85	3.69
16	I1_SR1	SilentIntronRegion	1	89.90	24.65	17.83	12.27	1.54	13.77	3.80
17	I1_AR2	ActiveIntronRegion	1	88.65	43.46	23.19	18.31	2.21	25.20	6.17
18	E2_Aa	NovelBoundary	1	109.60	55.54	20.71	25.17	3.32	34.06	5.17
19	ER2a	ExonRegion	1	38.47	89.93	9.42	27.20	0.54	25.45	65.99
20	E2_Da	NovelBoundary	1	127.48	68.80	27.12	45.19	3.11	46.93	4.89
21	E2a_E3a	KnownJunction	1	31.19	95.13	7.98	43.56	0.00	33.66	125.70
22	I2	Intron	1	67.75	34.21	15.92	18.59	1.89	24.02	2.90
23	I2_AR1	ActiveIntronRegion	1	69.52	37.72	16.67	19.51	2.02	27.98	2.90
24	I2_SR1	SilentIntronRegion	1	69.53	29.14	15.54	18.09	1.73	17.06	3.16
25	ER3a	ExonRegion	0	180.91	608.13	45.35	184.76	10.77	166.03	209.07
26	E3a_E4a	KnownJunction	0	301.92	761.16	66.85	253.49	31.14	238.41	206.24
27	ER4a	ExonRegion	0	271.92	815.64	74.08	247.76	71.43	264.80	191.69
28	E4a_E5a	KnownJunction	0	212.43	652.50	58.39	208.87	70.33	228.79	153.46
29	E4a_E6a	KnownJunction	0	11.08	119.59	4.83	21.40	1.18	43.92	8.40
30	ER5a	ExonRegion	0	255.85	713.24	74.25	214.59	40.07	235.05	196.34
31	E5a_E6a	KnownJunction	0	280.06	839.92	79.67	260.83	38.08	271.08	256.45
32	E6_Aa	NovelBoundary	1	133.62	14.90	46.92	7.23	0.00	4.64	1.40
33	ER6a	ExonRegion	0	279.23	904.02	83.18	270.16	47.12	296.19	238.11
34	E6a_E7a	KnownJunction	0	259.91	798.10	69.88	254.36	44.05	249.13	198.83
35	I6	Intron	1	58.36	18.01	16.08	9.57	1.36	8.56	3.81
36	I6_SR2	SilentIntronRegion	1	59.29	18.27	16.54	9.76	1.35	8.63	3.82
37	ER7a	ExonRegion	0	299.95	854.12	75.24	244.33	45.91	241.70	229.04
38	E7a_E8a	KnownJunction	0	262.67	861.36	70.01	223.18	35.80	270.97	213.61
39	E8_Aa	NovelBoundary	1	85.99	23.83	7.67	1.30	1.91	5.15	0.00
40	ER8a	ExonRegion	0	242.76	762.28	56.38	206.89	41.06	201.70	215.83
41	E8_Da	NovelBoundary	1	78.01	52.91	18.57	24.84	0.00	34.81	3.05
42	E8a_E9a	KnownJunction	1	144.84	506.30	31.43	119.82	39.26	104.71	177.97
43	E8a_E10a	NovelJunction	0	27.29	88.77	6.38	35.87	0.95	39.07	1.78
44	ER9a	ExonRegion	0	165.46	566.97	36.54	140.15	37.36	117.86	166.70
45	E9a_E10a	KnownJunction	0	195.19	508.88	44.95	113.65	44.98	81.66	148.73
46	I9	Intron	0	53.55	33.67	15.79	13.51	1.63	16.14	3.49
47	I9_SR1	SilentIntronRegion	1	91.05	42.46	30.59	16.49	2.40	17.20	3.35
48	I9_AR2	ActiveIntronRegion	1	63.94	39.87	15.08	16.32	2.48	21.97	4.58
49	ER10a	ExonRegion	0	265.07	617.97	61.90	180.17	41.29	161.38	190.87
50	E10_Da	NovelBoundary	1	42.53	32.71	19.28	20.91	0.00	14.02	0.72
51	E10a_E11a	KnownJunction	0	253.59	643.49	63.80	215.18	25.43	182.48	185.98
52	I10	Intron	1	91.15	39.12	21.25	18.23	1.61	21.15	4.71
53	I10_AR1	ActiveIntronRegion	1	84.91	24.30	17.48	21.45	1.62	14.22	4.05
54	I10_AR2	ActiveIntronRegion	1	141.59	51.98	31.17	22.30	2.11	27.65	6.30
55	I10_AR3	ActiveIntronRegion	1	88.18	40.58	21.24	18.29	1.70	21.76	4.80
56	E11_Aa	NovelBoundary	1	180.77	45.45	35.01	16.01	0.00	20.88	8.11
57	ER11a	ExonRegion	0	277.15	716.46	69.93	212.12	33.13	197.25	172.01
58	E11_Da	NovelBoundary	1	87.66	32.47	22.42	5.39	0.00	14.02	1.29
59	E11a_E12a	KnownJunction	0	334.27	737.15	69.04	194.62	47.53	203.38	184.43
60	I11	Intron	1	79.20	24.54	15.68	19.50	1.05	20.02	3.80
61	I11_AR2	ActiveIntronRegion	1	92.59	24.69	15.10	19.19	0.89	24.13	2.86
62	I11_SR2	SilentIntronRegion	1	81.04	25.81	17.15	21.09	1.22	19.84	4.46
63	ER12a	ExonRegion	0	305.79	680.85	79.03	219.27	51.53	203.53	204.01
64	E12a_E13a	KnownJunction	0	278.10	670.71	86.08	238.46	53.37	214.80	184.19
65	ER13a	ExonRegion	0	295.32	554.84	71.20	175.48	46.83	185.21	151.41
66	ER13b	ExonRegion	0	2.31	12.15	0.00	8.73	2.43	4.90	6.75
67	IG11_SR1	SilentIntergenicRegion	0	13.83	2.43	3.39	3.56	0.00	7.36	0.00