Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TTF2	Gene	0	33.04	33.78	27.81	7.92	182.02	14.06	36.32
2	369466	Transcript	0	29.73	32.48	27.71	6.86	198.19	12.60	39.20
3	ER1a	ExonRegion	0	19.76	20.35	22.82	4.88	162.49	5.08	14.67
4	E1a_E2a	KnownJunction	0	38.72	37.88	41.80	8.83	295.70	10.64	29.81
5	ER2a	ExonRegion	0	14.98	24.82	15.03	3.81	50.43	7.07	15.19
6	E2a_E3a	KnownJunction	0	8.76	32.89	5.83	3.90	14.41	7.24	15.89
7	ER3a	ExonRegion	0	28.42	38.88	27.89	8.11	50.18	12.71	28.97
8	E3a_E4a	KnownJunction	0	36.13	39.93	42.72	4.98	123.86	14.31	27.17
9	ER4a	ExonRegion	0	22.75	46.24	30.11	7.50	193.93	14.47	38.46
10	E4a_E5a	KnownJunction	0	21.38	51.57	20.36	6.96	144.96	16.29	41.32
11	ER5a	ExonRegion	0	42.67	64.85	41.28	12.19	145.35	22.71	41.61
12	E5a_E6a	KnownJunction	0	27.77	37.20	28.88	4.55	106.57	20.88	45.50
13	ER6a	ExonRegion	0	20.92	31.20	21.61	3.13	128.21	18.67	37.39
14	E6a_E7a	KnownJunction	0	14.15	27.98	26.44	1.19	135.20	13.80	34.27
15	ER7a	ExonRegion	0	21.89	31.83	21.56	5.98	157.56	11.75	43.10
16	E7a_E8a	KnownJunction	0	15.96	41.48	14.93	7.18	149.34	11.12	35.93
17	E8_Aa	NovelBoundary	0	3.42	10.51	1.51	1.46	21.92	6.81	3.08
18	ER8a	ExonRegion	0	27.58	46.92	24.17	13.33	170.49	12.21	43.40
19	E8a_E9a	KnownJunction	0	28.22	49.02	23.57	12.41	137.07	9.33	32.63
20	ER9a	ExonRegion	0	21.75	36.56	21.97	9.50	143.39	9.28	42.59
21	E9a_E10a	KnownJunction	0	31.78	31.81	31.69	10.67	250.15	17.15	59.03
22	ER10a	ExonRegion	0	38.24	38.17	36.75	7.74	266.31	15.13	61.04
23	E10_Da	NovelBoundary	0	13.72	15.37	9.70	1.06	15.31	4.82	14.50
24	E10a_E11a	KnownJunction	0	34.65	29.37	32.76	1.68	238.80	9.59	61.50
25	E10a_E12a	NovelJunction	0	0.00	4.07	3.55	0.00	20.77	5.90	3.02
26	ER11a	ExonRegion	0	35.02	32.32	32.14	11.02	261.83	10.43	55.05
27	E11_Da	NovelBoundary	1	14.25	3.02	2.64	1.65	19.50	6.27	4.53
28	E11a_E12a	KnownJunction	1	27.72	26.19	34.22	10.16	396.46	3.32	53.36
29	ER12a	ExonRegion	0	34.51	33.94	32.79	9.71	238.94	7.93	59.26
30	E12a_E13a	KnownJunction	0	13.64	28.53	18.47	4.61	144.01	8.98	35.83
31	ER13a	ExonRegion	0	23.19	19.42	27.29	6.78	182.90	14.03	45.45
32	E13a_E14a	KnownJunction	0	17.98	13.71	16.67	4.66	101.57	8.39	28.78
33	ER14a	ExonRegion	0	17.61	14.03	27.04	6.24	145.81	7.72	29.14
34	E14a_E15a	KnownJunction	0	20.71	14.42	24.99	4.47	208.49	13.56	25.34
35	ER15a	ExonRegion	0	29.75	15.87	28.46	8.70	185.49	16.99	33.77
36	E15a_E16a	KnownJunction	0	33.16	20.39	35.78	10.43	165.10	15.30	36.46
37	ER16a	ExonRegion	0	29.69	28.21	31.24	7.20	196.17	15.01	42.44
38	E16a_E17a	KnownJunction	0	23.53	22.70	19.50	3.96	176.08	11.18	35.66
39	ER17a	ExonRegion	0	26.38	30.07	22.56	4.23	199.77	13.92	34.72
40	E17a_E18a	KnownJunction	1	17.77	24.91	25.09	7.31	149.17	3.67	34.01
41	ER18a	ExonRegion	0	30.73	33.76	26.73	5.35	243.61	17.06	43.71
42	E18a_E19a	KnownJunction	0	64.39	45.90	31.96	7.07	325.46	14.20	45.09
43	ER19a	ExonRegion	0	66.39	47.40	44.17	7.67	312.90	16.87	53.93
44	E19a_E20a	KnownJunction	0	39.49	50.41	39.00	5.01	317.92	19.30	44.36
45	ER20a	ExonRegion	0	49.13	43.96	33.07	8.25	303.96	17.46	49.50
46	E20a_E21a	KnownJunction	0	44.58	24.30	40.93	3.71	273.89	14.85	35.63
47	E20a_E22a	NovelJunction	0	1.03	3.86	3.84	2.71	17.22	7.66	1.43
48	ER21a	ExonRegion	0	30.25	29.93	26.10	3.12	250.78	13.10	41.31
49	E21a_E22a	KnownJunction	0	19.84	21.70	15.94	5.45	237.35	14.04	38.21
50	ER22a	ExonRegion	0	44.51	26.45	29.57	9.66	282.55	10.35	47.49
51	E22a_E23a	KnownJunction	0	49.17	37.52	31.70	8.99	371.59	9.73	42.09
52	ER23a	ExonRegion	0	32.41	16.78	19.49	6.17	182.15	10.07	23.74
53	IG41	Intergenic	0	3.10	2.35	2.80	0.72	78.43	2.19	3.03
54	IG41_SR1	SilentIntergenicRegion	0	3.50	2.28	1.31	0.00	54.75	0.93	1.53
55	IG41_AR1	ActiveIntergenicRegion	0	3.09	2.09	3.34	0.43	97.42	1.34	3.23
56	IG41_SR2	SilentIntergenicRegion	0	3.53	1.46	1.46	1.94	82.88	0.00	5.62
57	IG41_AR2	ActiveIntergenicRegion	0	3.55	2.64	3.75	0.97	98.55	3.27	3.69