Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PKN2	Gene	0	136.65	66.96	162.67	82.20	88.42	47.46	98.26
2	316005	Transcript	0	14.06	6.23	11.89	4.76	10.41	5.79	3.68
3	370505	Transcript	1	6.78	3.89	13.71	12.33	1.04	0.00	3.35
4	370521	Transcript	0	0	0	0	0	0	0	0
5	370513	Transcript	0	57.21	31.89	75.95	34.60	43.26	23.70	44.71
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.36	0.00	0.00
7	ER1b	ExonRegion	0	12.70	21.84	14.98	27.21	7.86	11.14	11.00
8	E1a_E2a	KnownJunction	0	38.55	50.91	62.47	61.17	20.54	30.82	31.74
9	ER2a	ExonRegion	0	171.89	96.31	210.30	106.17	64.09	60.38	106.91
10	E2a_E3a	KnownJunction	0	221.71	105.51	266.21	93.63	101.25	62.93	126.80
11	E3_Aa	NovelBoundary	1	102.06	0.00	105.78	1.22	0.00	0.00	0.75
12	ER3a	ExonRegion	0	172.79	95.20	235.82	100.77	86.18	63.09	126.44
13	E3_Ab	KnownBoundary	0	171.12	116.12	245.59	97.80	82.30	47.70	117.22
14	ER3b	ExonRegion	0	154.29	114.31	238.99	120.41	93.49	60.23	129.48
15	E3a_E4a	KnownJunction	0	148.94	110.81	225.11	133.02	99.93	72.81	127.08
16	ER4a	ExonRegion	0	157.94	113.16	229.02	125.75	103.47	60.89	122.56
17	E4a_E5a	KnownJunction	0	201.20	111.86	283.80	139.38	97.35	67.75	139.85
18	ER5a	ExonRegion	0	234.59	114.77	288.94	122.26	123.29	64.55	148.13
19	E5a_E6a	KnownJunction	0	298.22	112.65	329.97	127.65	153.79	64.64	144.30
20	ER6a	ExonRegion	0	316.47	144.50	337.01	158.97	173.53	71.84	146.73
21	E6a_E7a	KnownJunction	0	275.70	113.57	262.20	130.01	179.67	44.35	110.24
22	E6a_E8a	KnownJunction	1	6.78	3.89	13.71	12.33	1.04	0.00	3.35
23	E7_Aa	NovelBoundary	1	119.42	2.42	104.57	0.00	0.00	1.58	0.80
24	ER7a	ExonRegion	0	283.05	119.40	247.66	153.69	181.61	56.86	139.65
25	E7a_E8a	KnownJunction	0	300.42	127.21	267.48	173.71	194.36	51.86	146.67
26	ER8a	ExonRegion	0	253.98	110.06	242.93	132.39	170.06	58.44	155.95
27	E8a_E9a	KnownJunction	0	250.73	108.32	228.24	133.07	125.73	52.50	123.19
28	ER9a	ExonRegion	0	209.20	91.44	220.38	119.85	118.05	55.31	130.44
29	E9_Da	KnownBoundary	0	74.04	28.48	84.04	42.21	25.63	25.25	50.23
30	E9a_E9b	KnownJunction	0	114.43	63.79	151.89	69.19	86.52	47.41	89.41
31	E9_Ab	KnownBoundary	0	58.46	40.64	64.52	46.89	50.19	21.92	34.37
32	ER9b	ExonRegion	0	164.45	78.97	202.09	110.98	102.04	58.03	131.10
33	ER9c	ExonRegion	0	150.89	79.34	199.66	105.08	114.72	50.30	130.59
34	E9b_E10a	KnownJunction	0	149.54	71.12	207.57	85.82	96.87	49.50	124.40
35	ER10a	ExonRegion	0	156.85	69.76	221.94	80.79	121.87	51.52	125.59
36	E10a_E11a	KnownJunction	0	142.92	57.43	206.14	72.25	118.12	49.85	121.73
37	ER11a	ExonRegion	0	120.60	95.26	182.60	98.17	69.51	56.88	137.76
38	E11_Da	KnownBoundary	0	14.70	6.44	11.14	1.68	5.30	6.51	1.89
39	E11a_E11b	KnownJunction	0	119.67	97.44	185.97	134.81	61.18	75.25	165.94
40	ER11b	ExonRegion	0	15.18	8.25	15.35	6.01	6.17	7.09	3.86
41	E11_Ab	KnownBoundary	0	14.82	11.64	18.03	0.00	3.53	5.15	5.96
42	ER11c	ExonRegion	0	152.02	88.72	203.99	117.08	110.22	60.17	139.31
43	E11_Db	KnownBoundary	0	9.70	3.07	9.13	2.87	7.40	0.00	1.40
44	E11b_E12a	KnownJunction	0	203.78	89.90	222.05	107.66	119.04	57.57	122.95
45	ER11d	ExonRegion	0	26.99	10.43	20.31	8.28	24.70	10.27	7.18
46	E12_Aa	NovelBoundary	1	89.94	0.00	90.33	0.00	5.09	4.37	0.00
47	ER12a	ExonRegion	0	160.15	98.43	203.42	113.79	97.07	59.94	123.40
48	E12a_E13a	KnownJunction	0	165.76	75.11	200.24	89.81	102.70	57.14	100.58
49	ER13a	ExonRegion	0	157.79	86.06	194.14	92.16	103.80	55.44	117.14
50	E13a_E14a	KnownJunction	0	147.54	103.64	177.53	80.51	114.20	45.16	123.26
51	ER14a	ExonRegion	0	145.39	96.29	183.39	93.24	110.87	36.93	127.49
52	E14a_E15a	KnownJunction	0	130.23	88.59	165.06	96.66	97.77	33.29	118.55
53	E15_Aa	NovelBoundary	1	45.03	0.00	55.33	1.06	0.97	0.00	2.82
54	ER15a	ExonRegion	0	150.28	86.56	196.05	101.57	114.16	40.69	132.68
55	E15a_E17a	KnownJunction	0	148.42	69.46	179.31	96.47	111.62	52.47	129.18
56	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER17a	ExonRegion	0	129.11	69.71	182.85	87.74	102.59	43.51	129.59
58	E17a_E18a	KnownJunction	0	108.84	57.56	172.79	77.97	108.03	42.05	117.79
59	ER18a	ExonRegion	0	106.12	68.87	171.91	90.45	98.78	52.37	115.84
60	E18a_E19a	KnownJunction	0	113.54	79.02	161.31	84.36	73.35	54.64	112.92
61	ER19a	ExonRegion	0	97.29	65.64	151.33	92.43	81.77	51.51	110.54
62	E19_Da	NovelBoundary	1	32.24	29.50	37.54	8.40	10.30	9.22	31.50
63	E19a_E20a	KnownJunction	0	75.86	49.39	123.84	83.98	109.25	39.80	103.70
64	I19	Intron	0	44.06	11.18	40.98	8.89	14.40	7.04	23.77
65	I19_AR1	ActiveIntronRegion	0	47.35	10.24	42.31	7.69	15.79	6.58	23.88
66	I19_SR1	SilentIntronRegion	1	53.48	13.40	52.59	13.28	16.05	4.95	34.60
67	I19_AR2	ActiveIntronRegion	0	25.97	12.79	27.71	9.51	8.61	10.45	14.99
68	I19	Intron	0	60.97	17.27	50.02	11.20	20.29	6.08	22.38
69	I19_AR1	ActiveIntronRegion	0	62.42	18.43	52.45	11.74	19.79	5.81	22.56
70	I19_SR1	SilentIntronRegion	0	60.76	13.56	43.69	10.35	24.28	7.84	23.21
71	E20_Aa	NovelBoundary	1	47.57	23.83	38.21	6.39	30.96	15.52	36.09
72	ER20a	ExonRegion	0	114.70	74.20	181.56	116.63	92.90	66.32	124.06
73	E20a_E21a	KnownJunction	0	84.30	86.12	141.07	112.35	78.49	67.94	118.45
74	ER21a	ExonRegion	0	179.27	101.22	210.98	140.69	114.76	79.19	151.78
75	E21a_E22a	KnownJunction	0	251.55	123.76	274.53	187.47	188.34	85.25	205.48
76	ER22a	ExonRegion	0	132.63	54.71	154.07	72.35	90.28	49.29	96.30