Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 SPOCD1 Gene 0 1.10 21.27 1.47 2.63 2.98 2.49 14.35 2 257100 Transcript 0 0.19 9.31 0.16 0.37 0.64 1.51 2.22 3 373648 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 360482 Transcript 0 0 0 0 0 0 0 0 5 294514 Transcript 0 0.00 3.33 0.12 0.41 0.06 0.85 1.34 6 IG6_AR5 ActiveIntergenicRegion 0 375.08 313.99 237.26 168.67 269.26 263.64 155.14 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.40 0.00 0.00 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 1.98 0.00 0.00 9 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.97 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.81 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.13 0.07 0.13 1.46 0.00 0.07 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 1.18 0.00 0.00 13 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 2.02 0.00 0.00 14 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 2.14 0.00 0.00 15 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER4a ExonRegion 0 0.00 0.00 0.29 0.00 1.15 0.00 0.00 17 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 3.37 0.00 0.00 18 ER5a ExonRegion 0 0.00 0.00 0.41 0.00 3.88 0.74 0.00 19 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 4.47 0.00 0.00 20 ER6a ExonRegion 0 0.00 0.04 0.00 0.00 2.15 0.00 0.00 21 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 2.03 0.00 0.00 22 E6a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 2.98 0.00 0.00 24 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 1.84 0.00 0.00 25 E8_Aa NovelBoundary 0 2.67 18.02 3.64 0.00 0.00 1.26 2.78 26 ER8a ExonRegion 0 0.00 10.30 0.49 0.14 0.23 3.39 4.70 27 E8_Ab KnownBoundary 0 0.83 22.91 2.64 0.00 1.04 5.60 10.30 28 ER8b ExonRegion 0 1.15 33.95 3.52 3.64 3.86 7.84 19.76 29 E8a_E9a KnownJunction 0 1.03 43.61 3.89 6.50 5.30 9.86 20.77 30 ER9a ExonRegion 0 1.10 38.29 4.55 5.84 3.23 7.74 22.62 31 E9a_E10a KnownJunction 0 3.34 34.94 7.20 7.67 2.05 5.68 15.49 32 E9a_E11a NovelJunction 0 0.00 12.03 1.78 0.00 0.00 0.00 6.18 33 ER10a ExonRegion 0 1.74 38.32 4.69 6.19 8.47 4.76 17.71 34 E10a_E11a KnownJunction 0 0.00 1.63 0.00 1.49 0.00 0.00 0.67 35 E10_Db NovelBoundary 0 0.00 4.20 0.00 0.00 2.12 1.47 10.33 36 E10b_E11a KnownJunction 0 0.00 30.90 0.65 1.16 2.35 2.09 9.86 37 ER10b ExonRegion 0 0.00 32.40 0.68 1.25 3.24 2.86 11.47 38 I10 Intron 0 1.41 7.98 2.22 1.27 3.32 0.45 12.10 39 I10_AR1 ActiveIntronRegion 0 1.35 8.35 2.27 1.43 3.41 0.50 13.01 40 E11_Aa NovelBoundary 0 0.85 2.57 0.82 1.27 1.96 0.00 11.75 41 ER11a ExonRegion 0 4.58 51.75 3.28 4.45 4.36 5.43 35.66 42 E11a_E12a KnownJunction 0 6.98 49.39 4.96 4.47 2.31 3.81 25.38 43 I11 Intron 0 1.29 3.26 1.44 1.26 0.53 0.82 7.46 44 I11_SR1 SilentIntronRegion 0 1.16 3.02 1.49 0.52 0.65 1.55 8.97 45 E12_Aa NovelBoundary 0 2.69 10.38 3.02 1.14 0.00 1.42 14.89 46 ER12a ExonRegion 0 3.22 68.17 3.63 2.16 5.58 5.53 33.57 47 E12_Da KnownBoundary 0 4.27 68.86 3.46 2.55 2.05 6.27 40.72 48 E12a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER12b ExonRegion 0 4.25 64.43 3.64 1.95 4.31 6.94 27.23 50 E12_Db NovelBoundary 0 0.00 8.64 3.87 3.06 0.00 2.87 17.17 51 E12b_E13a KnownJunction 0 4.49 59.03 2.64 2.25 7.52 10.37 19.73 52 I12 Intron 0 0.00 1.95 0.65 0.40 0.69 0.00 7.77 53 I12_AR1 ActiveIntronRegion 0 0.00 1.96 0.66 0.40 0.70 0.00 7.84 54 E13_Aa NovelBoundary 0 0.00 7.72 2.41 0.00 1.91 0.00 38.24 55 ER13a ExonRegion 0 3.26 52.03 2.51 2.45 6.55 8.67 23.23 56 E13_Ab KnownBoundary 0 1.94 41.59 2.40 1.54 3.37 4.07 20.28 57 ER13b ExonRegion 0 0.98 41.56 1.49 3.13 5.48 2.72 21.48 58 E13_Da NovelBoundary 0 0.00 7.70 1.62 1.41 0.00 0.00 23.55 59 E13a_E14a KnownJunction 0 1.79 46.89 0.73 2.30 5.26 4.45 20.01 60 I13 Intron 0 0.00 0.43 0.81 0.89 0.00 0.00 10.32 61 I13_SR1 SilentIntronRegion 0 0.00 0.35 0.93 1.03 0.00 0.00 10.13 62 I13_AR1 ActiveIntronRegion 0 0.00 0.99 0.05 0.00 0.00 0.00 11.95 63 E14_Aa NovelBoundary 0 0.00 3.18 0.73 1.00 0.00 0.00 21.63 64 ER14a ExonRegion 0 1.03 48.14 2.18 2.16 3.71 4.94 26.71 65 E14_Da NovelBoundary 0 0.00 4.57 2.34 0.00 2.17 0.00 25.64 66 E14a_E15a KnownJunction 0 0.68 41.30 0.00 4.01 2.10 0.00 16.71 67 E14a_E16b KnownJunction 0 0.00 1.39 0.00 0.00 0.00 0.00 0.00 68 E15_Aa NovelBoundary 0 0.00 5.83 3.97 2.17 0.00 0.00 19.69 69 ER15a ExonRegion 0 1.89 40.66 1.85 4.79 5.29 4.04 31.81 70 E15_Da NovelBoundary 0 0.77 16.71 3.46 3.25 3.46 1.58 24.99 71 E15a_E16a KnownJunction 0 0.72 1.58 0.00 0.00 0.00 0.00 0.00 72 E15a_E16b KnownJunction 0 0.77 37.23 0.65 1.46 1.18 6.03 8.56 73 I15 Intron 0 0.72 11.41 2.75 1.32 3.19 1.88 34.32 74 I15_AR1 ActiveIntronRegion 0 0.72 11.45 2.76 1.33 3.20 1.88 34.42 75 E16_Aa NovelBoundary 0 0.70 8.20 1.78 2.33 4.43 2.87 25.77 76 ER16a ExonRegion 0 0.42 4.98 0.19 0.06 0.06 0.12 10.46 77 E16_Ab KnownBoundary 0 0.63 6.88 1.09 0.00 0.00 1.42 21.07 78 ER16b ExonRegion 0 2.54 42.08 2.68 7.24 3.77 4.17 34.23 79 ER16c ExonRegion 0 0.00 2.43 0.68 0.00 0.00 0.00 3.12 80 ER16d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.34