Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CAP1	Gene	0	791.16	782.52	1126.51	915.79	951.98	348.25	1495.26
2	372805	Transcript	1	42.21	82.52	94.45	98.30	167.08	22.81	232.81
3	372802	Transcript	1	47.83	87.12	72.11	71.93	127.00	20.72	188.53
4	340450	Transcript	0	0	0	0	0	0	0	0
5	372792	Transcript	0	0	0	0	0	0	0	0
6	372798	Transcript	0	0	0	0	0	0	0	0
7	372797	Transcript	0	0	0	0	0	0	0	0
8	401065	Transcript	0	0.00	0.00	0.17	0.00	0.00	0.00	0.00
9	372794	Transcript	0	82.21	0.00	169.02	0.00	0.00	0.00	0.00
10	IG33_AR4	ActiveIntergenicRegion	0	10.76	9.31	5.42	9.98	0.00	5.31	0.00
11	IG33_SR3	SilentIntergenicRegion	0	11.45	9.72	5.69	11.97	0.00	6.13	0.00
12	IG33_AR5	ActiveIntergenicRegion	0	6.18	10.05	9.16	9.09	0.48	5.00	0.90
13	ER1a	ExonRegion	0	1.25	1.21	1.95	2.96	0.00	0.92	1.18
14	ER1b	ExonRegion	0	6.19	20.30	8.87	18.96	0.59	5.39	5.16
15	E1_Ac	KnownBoundary	0	4.24	17.23	3.75	5.82	0.00	2.14	0.00
16	ER1c	ExonRegion	0	8.08	31.82	15.86	15.59	5.88	8.94	18.79
17	E1_Ad	KnownBoundary	0	10.06	20.20	23.67	11.35	4.40	10.96	24.46
18	E1_Ae	KnownBoundary	0	1.02	0.00	0.00	0.00	0.00	0.00	0.00
19	E1_Af	KnownBoundary	0	0.93	11.95	5.79	9.67	0.00	1.53	9.95
20	E1_Ag	KnownBoundary	0	21.05	55.17	55.74	69.35	116.46	17.63	116.61
21	ER1d	ExonRegion	0	46.62	136.06	116.96	125.11	122.02	41.28	239.48
22	E1_Da	NovelBoundary	0	106.08	159.20	224.44	221.31	468.32	78.74	387.05
23	E1a_E2a	KnownJunction	0	47.83	87.12	72.11	71.93	127.00	20.72	188.53
24	E1a_E2b	KnownJunction	1	83.17	163.83	186.94	193.65	334.15	44.70	464.44
25	ER1e	ExonRegion	0	48.41	144.57	123.96	133.42	131.20	45.36	255.67
26	ER1f	ExonRegion	1	79.98	218.39	206.91	237.40	273.36	71.49	465.88
27	ER1g	ExonRegion	1	242.55	499.66	551.75	594.14	891.65	165.37	1230.26
28	E1b_E2a	KnownJunction	1	84.58	154.11	183.62	159.27	334.24	42.91	441.54
29	E1b_E2b	KnownJunction	0	290.59	426.04	558.32	552.50	999.89	166.00	1075.92
30	ER1h	ExonRegion	1	264.60	426.35	554.33	533.63	990.40	150.12	1124.25
31	ER2a	ExonRegion	1	170.78	323.15	365.28	348.53	630.47	97.16	839.03
32	ER2b	ExonRegion	1	250.60	682.20	546.23	692.71	460.29	221.88	1203.74
33	E2a_E3a	KnownJunction	1	190.13	852.09	436.08	834.30	184.79	274.72	1006.01
34	E2a_E3b	KnownJunction	1	15.87	89.35	46.37	109.31	18.28	31.76	76.37
35	E3a_E8b	KnownJunction	0	82.21	0.00	169.02	0.00	0.00	0.00	0.00
36	ER3a	ExonRegion	1	229.76	907.50	531.24	903.11	196.39	295.16	1253.56
37	ER3b	ExonRegion	1	354.25	1036.02	751.75	1114.92	256.21	363.15	1665.50
38	ER3c	ExonRegion	0	603.36	1062.22	1239.17	1162.23	867.70	419.85	2254.26
39	E3b_E4a	KnownJunction	1	389.74	1038.80	977.73	1025.21	1778.92	386.00	1925.43
40	ER4a	ExonRegion	1	391.36	1094.62	976.25	1097.85	1059.23	397.24	1640.72
41	E4a_E5a	KnownJunction	0	423.86	1112.02	972.71	1179.68	488.93	460.90	1397.61
42	ER5a	ExonRegion	0	594.42	1107.73	1180.72	1175.63	718.86	447.14	1638.27
43	E5a_E6a	KnownJunction	0	687.04	1209.30	1379.11	1433.74	912.78	505.28	1923.55
44	ER6a	ExonRegion	0	847.30	1205.46	1504.65	1299.02	769.94	529.45	1876.29
45	E6a_E8a	KnownJunction	0	868.81	1250.02	1517.32	1294.74	594.99	595.06	1785.48
46	ER7a	ExonRegion	0	0.00	0.00	0.17	0.00	0.00	0.00	0.00
47	ER8a	ExonRegion	0	661.17	1181.25	1249.59	1096.46	701.47	492.95	1689.48
48	E8_Ab	KnownBoundary	0	528.12	876.84	981.64	808.32	897.93	340.63	1324.70
49	ER8b	ExonRegion	0	504.63	746.78	884.14	710.37	678.74	296.01	1214.48
50	E8a_E9a	KnownJunction	0	555.69	710.04	914.21	731.97	571.78	309.54	1229.21
51	ER9a	ExonRegion	0	391.53	645.79	607.37	713.16	522.47	292.35	1140.08
52	E9a_E10a	KnownJunction	0	439.03	973.28	673.39	1153.92	619.25	385.22	1295.12
53	ER10a	ExonRegion	0	573.03	1024.74	890.03	1193.81	859.99	422.04	1698.41
54	E10a_E11a	KnownJunction	0	858.95	847.60	1209.95	1050.54	1651.34	346.74	1875.32
55	ER11a	ExonRegion	0	1404.27	1128.67	1812.99	1422.85	1816.31	457.90	2545.86
56	E11a_E12a	KnownJunction	0	1670.05	1250.47	1954.15	1488.57	1764.51	542.43	2266.90
57	ER12a	ExonRegion	0	1898.14	1250.92	2305.02	1527.38	2048.86	531.61	2928.84
58	E12_Da	NovelBoundary	1	1045.76	26.95	1172.15	30.61	9.80	13.94	46.20
59	E12a_E13a	KnownJunction	0	2211.18	1191.78	2521.62	1481.45	2963.12	506.52	3069.73
60	ER13a	ExonRegion	0	2344.06	1190.66	2425.38	1471.13	2774.60	509.99	2560.81
61	E13a_E14a	KnownJunction	0	2383.64	1361.70	2547.88	1677.89	2471.03	578.69	2362.16
62	ER14a	ExonRegion	0	2470.95	1263.66	2491.53	1623.15	2575.91	529.07	2321.53
63	E14_Da	KnownBoundary	0	2481.09	1252.81	2496.30	1696.80	3355.16	535.19	2442.65
64	ER14b	ExonRegion	0	2670.33	1295.90	2768.59	1756.63	2960.56	550.12	2505.53
65	E14_Db	KnownBoundary	0	2889.70	1342.81	2885.26	1889.63	2228.96	593.13	2277.05
66	ER14c	ExonRegion	0	1025.80	936.16	1594.63	1134.41	1222.88	439.42	2008.31
67	E14_Dc	KnownBoundary	0	377.74	345.71	548.89	444.40	338.99	178.54	739.11
68	ER14d	ExonRegion	0	615.56	758.03	1038.52	933.79	606.10	463.50	1422.56
69	E14_Dd	KnownBoundary	0	593.53	731.92	843.88	886.80	507.88	494.88	1242.20
70	ER14e	ExonRegion	0	383.41	360.27	533.45	459.68	393.59	251.25	645.75
71	ER14f	ExonRegion	0	40.92	31.28	93.90	52.06	75.32	24.98	90.65