Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DHDDS	Gene	0	48.24	76.06	57.29	63.49	84.10	58.55	114.08
2	374194	Transcript	0	0.00	0.00	0.00	0.00	0.67	0.00	1.03
3	374190	Transcript	0	1.56	0.00	0.00	0.61	0.33	0.00	0.63
4	374192	Transcript	0	1.63	2.45	1.34	4.09	0.66	1.04	0.28
5	374187	Transcript	0	4.81	13.61	4.52	6.91	9.29	8.11	13.45
6	357049	Transcript	0	0	0	0	0	0	0	0
7	236342	Transcript	0	1.03	5.52	4.83	5.55	0.00	4.15	1.53
8	360009	Transcript	1	6.91	25.33	18.34	16.77	34.14	23.56	43.41
9	374186	Transcript	0	2.24	4.98	3.60	2.51	2.17	0.70	4.49
10	374185	Transcript	0	8.50	13.31	7.81	5.65	10.79	3.43	13.80
11	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.67	0.00	1.03
12	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	2.35	0.00	0.89
13	E1_Ad	KnownBoundary	0	3.64	3.34	2.86	3.71	12.47	6.41	9.96
14	ER1b	ExonRegion	0	0.00	0.00	0.00	0.90	3.64	0.00	3.26
15	ER1c	ExonRegion	0	3.55	3.55	1.67	3.36	15.57	5.66	11.36
16	ER1d	ExonRegion	0	24.66	18.26	19.41	17.64	96.32	18.82	43.87
17	E1a_E2a	KnownJunction	0	43.06	29.06	29.86	27.74	165.10	29.75	65.27
18	I1	Intron	1	9.38	33.91	13.50	18.43	15.11	15.94	34.02
19	I1_AR1	ActiveIntronRegion	1	9.42	34.04	13.55	18.50	15.17	16.00	34.15
20	E2_Aa	NovelBoundary	1	12.37	41.38	11.57	11.70	7.84	22.19	26.93
21	ER2a	ExonRegion	0	42.24	79.20	38.85	56.28	77.57	48.31	110.90
22	E2a_E3a	KnownJunction	0	28.09	105.06	28.65	62.09	82.78	55.53	110.82
23	ER3a	ExonRegion	0	52.32	122.02	51.68	83.07	106.71	88.36	144.41
24	E3_Da	NovelBoundary	1	7.91	23.59	1.65	2.30	10.77	1.45	17.37
25	E3a_E4a	KnownJunction	1	5.27	6.07	3.85	23.49	3.02	10.96	3.01
26	E3a_E4b	KnownJunction	0	36.10	105.93	44.07	45.38	199.71	63.81	121.37
27	I3_AR4	ActiveIntronRegion	0	15.30	16.58	11.01	14.54	17.55	8.32	20.57
28	E4_Aa	NovelBoundary	1	15.07	22.07	6.32	10.65	17.06	2.79	18.01
29	E4_Ab	NovelBoundary	0	6.01	15.34	3.48	20.62	10.86	16.27	12.44
30	ER4a	ExonRegion	0	7.24	15.84	4.91	21.72	14.81	17.01	12.85
31	ER4b	ExonRegion	0	44.03	122.35	59.25	79.40	123.73	93.87	145.93
32	E4_Da	KnownBoundary	0	5.06	8.28	5.98	1.68	3.23	1.66	8.54
33	E4a_E5a	KnownJunction	0	42.53	112.65	65.01	74.93	122.16	90.42	151.53
34	E4a_E6a	KnownJunction	0	1.03	5.52	4.83	5.55	0.00	4.15	1.53
35	ER4c	ExonRegion	0	2.24	4.98	3.60	2.51	2.17	0.70	4.49
36	ER5a	ExonRegion	0	45.53	124.30	78.11	82.37	125.25	100.32	168.19
37	E5a_E6a	KnownJunction	0	35.53	102.72	67.67	59.46	124.67	78.71	140.79
38	E5a_E8a	KnownJunction	0	9.61	24.67	9.04	13.82	17.47	16.21	26.90
39	ER6a	ExonRegion	0	42.08	114.22	72.45	81.17	119.60	84.95	159.74
40	E6_Da	KnownBoundary	0	9.31	11.93	13.75	3.36	6.50	0.00	10.82
41	E6a_E7a	KnownJunction	0	1.77	0.00	0.00	1.22	0.00	0.00	0.89
42	E6a_E8a	KnownJunction	0	35.17	118.01	71.23	71.95	129.03	92.35	153.25
43	ER6b	ExonRegion	0	8.50	13.31	7.81	5.65	10.79	3.43	13.80
44	E7_Aa	NovelBoundary	0	189.10	97.78	119.23	81.03	45.90	78.60	76.50
45	ER7a	ExonRegion	0	1.36	0.00	0.00	0.00	0.66	0.00	0.38
46	E7_Da	NovelBoundary	0	241.75	156.10	172.66	123.37	95.39	95.43	139.90
47	ER8a	ExonRegion	0	48.55	160.34	86.60	105.34	140.44	102.91	184.69
48	E8a_E9a	KnownJunction	0	66.96	135.09	85.96	122.97	133.66	101.17	176.25
49	E8a_E11a	KnownJunction	0	0.00	2.55	0.00	0.00	1.11	0.00	0.00
50	ER9a	ExonRegion	0	62.09	168.79	94.71	121.04	130.58	103.97	196.26
51	E9a_E10a	KnownJunction	0	1.03	1.55	0.00	1.25	0.00	0.00	0.00
52	E9a_E11a	KnownJunction	1	6.91	25.33	18.34	16.77	34.14	23.56	43.41
53	E9a_E11b	KnownJunction	0	39.77	107.66	71.75	92.87	97.84	76.78	141.72
54	ER10a	ExonRegion	0	2.23	3.34	2.69	6.93	1.32	2.08	0.55
55	ER11a	ExonRegion	0	16.91	58.62	36.58	45.20	63.78	41.68	83.31
56	ER11b	ExonRegion	0	48.29	120.23	56.06	103.66	95.00	76.62	126.47
57	E11_Da	KnownBoundary	1	34.28	140.60	37.08	107.15	76.40	74.88	120.81
58	ER11c	ExonRegion	0	67.79	82.86	77.12	77.33	104.39	70.62	144.22
59	ER11d	ExonRegion	0	1.63	2.28	2.29	1.40	4.35	2.76	3.29
60	IG2	Intergenic	0	8.46	15.10	9.55	15.12	2.94	10.36	11.87
61	IG2_SR1	SilentIntergenicRegion	0	9.70	17.76	11.25	16.66	3.71	11.93	14.04
62	IG2_AR1	ActiveIntergenicRegion	0	6.09	10.00	6.29	12.22	1.46	7.36	7.71