Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GUK1	Gene	0	65.49	311.24	70.02	222.12	61.52	198.75	352.11
2	366730	Transcript	0	0.41	1.00	0.50	0.90	0.66	2.40	1.20
3	312726	Transcript	0	27.71	51.30	24.33	57.66	21.12	58.99	74.49
4	366726	Transcript	0	0	0	0	0	0	0	0
5	366727	Transcript	0	0	0	0	0	0	0	0
6	366728	Transcript	0	0	0	0	0	0	0	0
7	366723	Transcript	0	0	0	0	0	0	0	0
8	391865	Transcript	0	0	0	0	0	0	0	0
9	366729	Transcript	0	0	0	0	0	0	0	0
10	366722	Transcript	0	0	0	0	0	0	0	0
11	366721	Transcript	0	2.25	16.63	1.77	7.87	1.39	14.41	7.26
12	366719	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	366720	Transcript	1	5.86	42.66	5.07	9.64	6.55	6.81	25.98
14	366718	Transcript	0	13.70	15.97	8.27	8.75	4.12	8.75	28.51
15	366715	Transcript	0	0	0	0	0	0	0	0
16	366716	Transcript	0	2.11	3.22	1.81	0.78	0.37	0.28	3.89
17	ER1a	ExonRegion	0	0.82	0.93	0.13	0.61	0.44	1.74	0.78
18	E1a_E6c	KnownJunction	0	0.00	1.08	0.86	1.19	0.88	3.06	1.62
19	ER2a	ExonRegion	0	6.40	34.02	7.60	31.31	24.75	9.81	51.94
20	E2_Af	KnownBoundary	0	41.57	65.15	55.30	80.51	23.05	41.70	250.03
21	ER2b	ExonRegion	0	17.67	104.48	21.68	89.78	68.03	42.91	130.87
22	ER2c	ExonRegion	0	22.09	133.84	24.39	107.97	77.34	60.48	164.94
23	E2_Ag	KnownBoundary	0	48.43	219.16	40.64	173.82	28.63	98.89	203.96
24	ER2d	ExonRegion	0	26.64	160.36	26.64	127.40	82.20	72.33	180.23
25	ER2e	ExonRegion	0	31.93	188.03	30.56	150.47	88.90	80.23	196.61
26	ER2f	ExonRegion	0	39.65	207.58	38.07	168.92	98.80	92.28	218.93
27	E2a_E3a	KnownJunction	0	14.04	20.96	9.07	24.30	9.59	20.02	29.34
28	E2a_E6b	KnownJunction	0	0.00	0.00	0.00	1.14	0.00	0.00	0.00
29	E2a_E6c	KnownJunction	0	39.97	124.03	29.79	91.81	22.68	57.49	137.48
30	ER2g	ExonRegion	0	51.19	231.49	41.36	185.88	45.43	109.39	247.55
31	ER3a	ExonRegion	0	34.81	62.85	29.46	74.83	17.03	78.74	87.19
32	E3a_E6c	KnownJunction	0	55.61	87.35	51.20	100.18	33.13	127.38	129.50
33	I3	Intron	0	15.77	38.42	8.13	7.63	4.53	8.35	28.84
34	I3_AR1	ActiveIntronRegion	0	15.86	38.61	8.18	7.66	4.56	8.40	29.00
35	E4_Aa	NovelBoundary	1	18.09	50.65	6.42	9.08	1.87	10.00	40.21
36	ER4a	ExonRegion	0	11.02	44.75	6.97	15.06	3.09	9.25	28.30
37	E4a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E4a_E6c	KnownJunction	1	5.86	42.66	5.07	9.64	6.55	6.81	25.98
39	I4	Intron	0	18.47	17.59	11.46	6.95	3.97	3.51	37.90
40	I4_SR2	SilentIntronRegion	0	23.14	19.56	12.97	7.22	4.29	2.22	42.18
41	I4_AR3	ActiveIntronRegion	0	34.70	25.32	23.44	7.49	7.25	4.41	47.63
42	I4_AR6	ActiveIntronRegion	0	19.86	13.36	9.38	2.49	1.62	6.13	25.95
43	I4_AR7	ActiveIntronRegion	0	19.11	12.91	9.06	2.96	0.91	4.44	28.42
44	I4_SR4	SilentIntronRegion	0	18.73	10.40	8.34	3.49	3.42	1.79	27.97
45	I4_AR8	ActiveIntronRegion	0	19.39	19.52	13.23	9.50	6.72	3.51	56.75
46	E5_Aa	NovelBoundary	1	21.18	29.98	4.56	13.25	6.73	5.41	63.82
47	ER5a	ExonRegion	0	13.70	15.97	8.27	8.75	4.12	8.75	28.51
48	E5_Ab	KnownBoundary	0	16.59	19.13	8.25	6.50	3.27	6.97	31.89
49	ER5b	ExonRegion	0	9.67	12.88	5.15	3.67	2.37	6.59	24.81
50	E5a_E6c	KnownJunction	0	5.12	6.96	2.50	4.52	0.00	2.63	15.01
51	I5	Intron	1	15.81	16.70	8.85	5.66	3.58	3.99	18.59
52	I5_AR1	ActiveIntronRegion	1	15.85	16.75	8.87	5.67	3.59	4.00	18.64
53	ER6a	ExonRegion	0	4.22	6.45	3.40	1.57	0.75	0.57	7.71
54	E6_Ab	KnownBoundary	0	9.08	6.25	5.20	1.54	2.10	1.21	14.80
55	E6_Ac	KnownBoundary	0	13.39	17.13	9.14	10.43	0.00	2.76	17.61
56	ER6b	ExonRegion	0	19.41	32.74	11.77	20.61	4.26	13.16	36.96
57	ER6c	ExonRegion	0	100.80	506.21	91.48	375.15	87.24	346.02	457.71
58	E6a_E7a	KnownJunction	0	101.01	596.73	120.67	446.73	103.69	374.47	687.87
59	E6b_E7a	KnownJunction	0	0.90	7.46	1.78	4.71	0.90	10.43	5.75
60	ER6d	ExonRegion	0	3.60	25.80	1.76	11.02	1.88	18.39	8.77
61	I6	Intron	0	15.72	72.90	8.03	29.91	5.15	33.11	18.88
62	I6_AR1	ActiveIntronRegion	0	15.79	73.26	8.06	30.06	5.18	33.27	18.98
63	ER7a	ExonRegion	0	205.81	822.75	219.20	655.72	170.15	539.67	1115.50
64	E7a_E8a	KnownJunction	0	249.63	800.99	240.03	653.11	259.04	538.09	1174.93
65	E7a_E8b	KnownJunction	1	6.54	100.83	18.72	66.43	13.83	50.28	68.07
66	E8_Ab	NovelBoundary	0	215.40	838.79	226.81	626.83	246.48	532.83	1145.91
67	ER8a	ExonRegion	0	262.38	957.49	278.24	748.12	290.33	658.97	1401.37
68	ER8b	ExonRegion	0	226.87	1158.56	255.33	800.47	261.31	739.48	1525.75
69	E8a_E9a	KnownJunction	0	174.28	1115.96	211.39	642.30	175.80	688.70	1289.96
70	ER9a	ExonRegion	0	212.44	1199.50	227.05	789.57	195.51	739.95	1367.37
71	E9a_E10a	KnownJunction	0	212.98	1008.01	221.46	716.29	126.31	712.39	1385.65
72	E9a_E10b	KnownJunction	0	0.85	5.33	0.59	0.00	0.00	3.03	10.93
73	E10_Ab	NovelBoundary	0	44.45	366.70	53.31	273.62	19.06	256.15	299.15
74	ER10a	ExonRegion	0	144.80	962.51	163.15	708.99	109.68	663.09	1023.07
75	ER10b	ExonRegion	0	128.02	854.00	158.60	634.54	136.44	562.84	896.47
76	E10a_E11a	KnownJunction	0	0.00	0.00	0.62	0.00	0.00	0.00	0.00
77	E10a_E12a	KnownJunction	0	151.13	647.35	174.44	439.15	177.60	401.33	870.38
78	E10a_E13a	KnownJunction	0	17.12	140.87	33.45	118.69	6.39	118.70	79.97
79	ER11a	ExonRegion	0	0.00	1.88	0.00	0.95	1.06	1.27	0.07
80	E11a_E12b	KnownJunction	0	0.00	4.26	0.00	1.68	1.15	1.39	0.00
81	E12_Ab	NovelBoundary	1	62.82	9.67	67.33	4.44	0.81	1.31	2.26
82	ER12a	ExonRegion	0	145.49	681.13	172.28	460.96	190.72	409.89	860.11
83	ER12b	ExonRegion	0	176.63	693.61	197.76	455.75	214.34	409.95	867.69
84	E12_Da	KnownBoundary	0	139.31	494.27	146.07	345.66	148.35	307.63	618.17
85	E12_Db	KnownBoundary	0	5.69	3.15	3.81	6.37	1.08	4.34	10.93
86	E12b_E13a	KnownJunction	0	184.79	682.22	190.46	517.14	184.12	416.41	846.37
87	ER12c	ExonRegion	0	184.33	703.40	203.49	512.94	193.27	434.15	878.68
88	ER12d	ExonRegion	0	2.93	5.91	3.48	8.73	3.65	3.91	8.87
89	E12c_E13a	KnownJunction	0	0.90	4.15	1.44	4.23	1.18	4.64	2.28
90	ER13a	ExonRegion	0	146.37	738.00	186.76	555.79	130.54	479.43	761.22
91	E13_Da	KnownBoundary	0	115.96	624.71	137.98	439.31	92.76	381.09	618.33
92	ER13b	ExonRegion	0	94.59	566.06	111.82	370.75	75.19	326.88	465.14
93	E13_Db	KnownBoundary	0	66.33	456.47	82.07	264.68	55.12	221.21	332.27
94	E13_Dc	KnownBoundary	0	19.98	73.38	26.83	65.21	50.81	82.41	100.16
95	ER13c	ExonRegion	0	85.30	445.76	96.27	311.04	82.90	277.03	364.39
96	E13_Dd	KnownBoundary	0	23.62	87.35	22.60	75.53	25.82	67.21	67.52
97	ER13d	ExonRegion	0	87.60	404.72	90.87	302.48	75.20	263.94	331.23
98	ER13e	ExonRegion	0	70.27	296.15	69.01	259.99	54.58	227.33	269.55
99	E13_De	KnownBoundary	0	52.39	247.21	67.33	257.20	57.93	214.61	273.29
100	ER13f	ExonRegion	0	37.99	158.37	57.16	137.70	39.26	117.39	195.58
101	E13_Df	KnownBoundary	0	11.42	21.23	10.81	20.26	17.54	7.53	48.93
102	E13_Dg	KnownBoundary	0	0.87	0.00	0.00	0.00	0.00	0.00	0.56
103	ER13g	ExonRegion	0	12.29	29.04	19.31	25.31	9.80	15.08	53.83
104	ER13h	ExonRegion	0	1.92	1.82	2.20	0.00	0.40	0.00	1.18
105	ER13i	ExonRegion	0	0.00	0.00	0.21	0.00	0.00	0.00	0.07